Protein Info for GFF2709 in Variovorax sp. SCN45

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 597 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 54 to 75 (22 residues), see Phobius details amino acids 87 to 111 (25 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 142 to 160 (19 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details PF00512: HisKA" amino acids 222 to 286 (65 residues), 50.6 bits, see alignment E=2.5e-17 PF02518: HATPase_c" amino acids 331 to 440 (110 residues), 86.4 bits, see alignment E=2.8e-28 PF00072: Response_reg" amino acids 477 to 589 (113 residues), 42.3 bits, see alignment E=1.1e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (597 amino acids)

>GFF2709 hypothetical protein (Variovorax sp. SCN45)
MTSPLPSPTDSHRIFEVQLSVLLRSFPFALAGSVISACVVAYVMQAVVPKAQVVAWISAT
LVVAAFRFGAMLYYARTRSRPESGERWLRQMVIGNIASGILWGLPFAYWTFFVPLEYQLF
FIVVLFGLGTGAIYSNYMVLSAVYSFVVPTFAPTFIALAVQPSAVNLALVSSGAAYLVAT
VAFIHRMNRTHLNALRLGYENLALLQQVRLEKEAAERSDLEKSRFLAAASHDLRQPVHAM
SLFLGLLANERLSEHGRYLLENITKASAAMGHLFDALLNISRLDAGVIHPRVQSFPLDRL
LDQIRTEYTPQAQQKGLALKVRRCAACVRSDPMLLERILRNLVSNAIAHTPHGRVLIGCR
KRGDAVRIEVWDTGPGIPKHEHERVFWEFHQLRNPERDRSKGLGLGLAIVRRTAALLGHT
LSLRSVEGRGTVFLLSVDAQQAAAPETPTEANAFAAMQAHAPAISAPPAKPATSQLILVI
DDDAQNREGLKLLLESWGHRVIAAPGTAELVELTADVPGKPGLIVSDYRLREHETGVEAI
DRLHEEYNDATIPALLVSGDTDPARLIEAAARAIPILHKPVEVEALRDWVDKLLAAG