Protein Info for GFF2700 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1091 PF00270: DEAD" amino acids 305 to 466 (162 residues), 69.2 bits, see alignment E=5.7e-23 PF04851: ResIII" amino acids 320 to 426 (107 residues), 36.9 bits, see alignment E=5.2e-13

Best Hits

Predicted SEED Role

"ATP-dependent RNA helicase DOB1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1091 amino acids)

>GFF2700 hypothetical protein (Xanthobacter sp. DMC5)
MFDPITSALIASSPQLSGLDLQSLPKRLTEAYAEIVAARIEFRGQPGATSERLTTVLAEM
RRLAAAQEAFVALEPDRGNRNAAAFVAASAHQVRLLATPPSERAGSYLDGTSVAPEVCAS
LLFLVAEAHADAAECAKQIVIAEERANSIDGVLLQTIRLLCQGHLNAIRRLELPALRETA
GGALAVEALYLTLLKGVQNLATRLLSRVDTPVDAGGVEQPRTTFGRVKELSVGSLGDVLG
IDAEVYSLFPGPLHLASLLLAADRDLIANATSRIMPPNGISEDAWWPIIRQMARRRPYLW
RNHKQAIEAHYLDIGVSSALSFPTGGGKSTLAELKIATALLRDKKVVFLVPTHALVDQTT
RALKSTFNAFEIVGDIEDDASAVEFIALPEVVVTTPERCLVLLSSQPAAFADLGLVVFDE
CHLLHPREPEKSRRSVDAMLAVLNLARAAPAADFLLLSAMMKNAEEVAAWMTELTGRQCL
HLDLAWKPTRQVRGCVVYPSSRIDELNAVLRQARIDRPKQKNAPAAVEKTLTARAFGLFS
LLQTWATQDRNDYALLPLLDAEHHFSTGTAANRRWYLTPNGNHTSALIAAGAAASGMKTL
VFVQTVPQVVAAARDFRKLVAHDPVVLNDDETALRQLVVEEMGGPSYCYLALEPDGRFAG
GAVTHHSLLLREERLLHESLFKRRPGANVLFATSTVAQGMNLPSEVVIISGDSRFDPAEN
KFAQLEAHELLNAAGRAGRAGESSQGFVLVVPSRVVPFDDKTSSIGGHWMKLQAIFSQSD
QCVDIDDPLTALLDAIHAGVREGMPLYLLNRLPPASAEGTDAPLRSLVERSFGAFRAKQT
ANAAWVESRIASAFQARSEHPTAEADKWIEGVGALTGVPAEALREIADLFANNDGLTTQA
AMDRLLSWLAAKPGNLMEVLRPENVAELFGGEFEKLQTEEKRVKYALPVIASLLHMWMAG
RPLCEMEALHPNPDSNACRHARHFVLRLVPDLAFLAGLPARLLQAKAGLGASVALPTALA
SLGSAVKEGCDSPETLAARINDGRAVSRVSSRQRFMEVVPYITPASATEPFEETQQRVRN
AVALKAFSTLI