Protein Info for GFF2696 in Sphingobium sp. HT1-2

Annotation: putative membrane protein-putative a lipopolysaccharide biosynthesis acyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 356 transmembrane" amino acids 34 to 53 (20 residues), see Phobius details amino acids 68 to 85 (18 residues), see Phobius details amino acids 105 to 124 (20 residues), see Phobius details amino acids 154 to 173 (20 residues), see Phobius details amino acids 182 to 201 (20 residues), see Phobius details amino acids 208 to 226 (19 residues), see Phobius details amino acids 238 to 268 (31 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details amino acids 314 to 332 (19 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 30 to 331 (302 residues), 88.7 bits, see alignment E=1.9e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (356 amino acids)

>GFF2696 putative membrane protein-putative a lipopolysaccharide biosynthesis acyltransferase (Sphingobium sp. HT1-2)
MTLVEKQKVNVRPDRLEQQPVSGPFRNRLKELDALRGIAAISVMLFHYTSIYPDFFPERR
SIGVRFDAGGYGVFLFFGISGFVISRTLENTVGIADFTIKRVARLFPAYWAAVLITTLVV
QWSGTERLQAEFETVMINLTMLQGFFFVPSVDGVYWTLTVELAFYICAALAWMARKRVRI
EYLLAGWMAVGAIASVSEIAPYRVQMLLMNQYSPFFAIGVLTYRAWSAQRRYLDQLPYFA
MALAILGFNGGAAFLIAGVGIQVMLWLAINGRLSAITHPILLYLGALSYPLYLIHHHAGF
VLLRAIDRAQIGPFAGVIVTSATMLGLAALLHHSIEAPAERAIRTWWLRRLSPQPV