Protein Info for PS417_01370 in Pseudomonas simiae WCS417

Annotation: peptidase M48

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 525 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01435: Peptidase_M48" amino acids 127 to 268 (142 residues), 59.3 bits, see alignment E=2.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1TDR4 at UniProt or InterPro

Protein Sequence (525 amino acids)

>PS417_01370 peptidase M48 (Pseudomonas simiae WCS417)
MKGSLWAASLLASTLLSGCATLKGADQAFMNLVGPSTQSRVQGHYVDNTDVRPYYKLDPQ
RQSQQRLSYDGRTVPAAEARQQNLVDIPMLQVYLQGIVTRLSKGWPGELPALQVKITDSY
SFGPSADPYGNVFVPLGMLDNVGSEDEIAAMLGHEMSHVLLHHHDRMAAFQQQKEMFTTV
ASTVALATMAADTGVDRSSGTMKLFSKDPAGTQKTIGNTVLYTALANTFSDHVWSTAWGR
TQEDQADLLGTDLMIRAGYAPRAATHSLERLSDFQGKQKPLLTGFLTARKNAMQDSLQQF
NLNRFTQELDVLVKDGLTTSITATAQYFNRSHMSATDRDTELRQYLQREYRQERRARINT
QSWAKMKSTPQVAKAMQGYKDAYFANDALEKNKVPDADGFIRKALASPVKDQPGIRRTAY
TVRLAQGRSGEALKELQAIKDWSLAGPSTFDLMISYHLKRGDGQSALAMIDKAERHLGSE
ELFITEKLLANQQVQNAQQVQTVLRKCEQYPARKENCKKLVPAKA