Protein Info for GFF2687 in Variovorax sp. SCN45

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 911 PF04174: CP_ATPgrasp_1" amino acids 152 to 477 (326 residues), 313.9 bits, see alignment E=1.8e-97 PF14403: CP_ATPgrasp_2" amino acids 152 to 536 (385 residues), 461 bits, see alignment E=4.5e-142 PF04168: Alpha-E" amino acids 585 to 899 (315 residues), 200.7 bits, see alignment E=7e-63

Best Hits

KEGG orthology group: None (inferred from 92% identity to vap:Vapar_3406)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (911 amino acids)

>GFF2687 Protein containing domains DUF404, DUF407, DUF403 (Variovorax sp. SCN45)
VEPLNESLFGAQALEFPAALASALAPAAQPGHFDELRGQATPVAAQRPAAAGSTAPATPQ
APLLYDATAEQRLAPSQSQSQSQSQSPAPSGEQPPLTPAWHDFFEQLGPGGFNDLPRRAV
SLERQIRDNGVTYNVYADANGPQRPWSLDLFPLIVSPESWSQIEAGVLQRVRVLDRVMAD
VYGPQQLLAEGLIPPALVRGHPGYLRALHGVKPPGDTWLHITAFDLARGPDGNWWVVSQR
TQAPSGLGYLLENRLAITRQFPQAFEALQVQRLAATYSAMMEGLQRMCPAGVPPHIALLT
PGPYNETYFEHAYLARYLGITLVEGSDLTVRDQRLYLKTLQGLRPVHGLIKRLDDQFLDP
LELRPDSTLGVPGLLQAIRAGNVLVANMPGSAFLESPALLGFLPGLARRLIGEKLKLPAL
PTWWCGERAALEAVLPQLGDCAIKPTYPGFDGRASFDAVLGSQLGRRELDEWAGRIVREG
DVHTVQGYQPLSQMPTWANDMGPGHIAPRAVMLRVFAVSDGAQSWRVLPGGLARLAGPDA
QIASMQRGGSSADVWVQTHGEVDRTTLLQPHATPASLARHRAPVTSRAAENMFWLGRYTE
RAENAVRMARLTLNLLGGEDQSSRPLLEWLHRVALRNALVPAEVPSAPKSRRVFERALIA
ELGDVERGGSVGFSLRCIRQAAAAVRERLSQDNWNQIVRAETDFLRRAAEQAGEGSFASS
AALRALESASTALAAMTGAQTDRMTRDDAWRLLSIGRHIERLGFLANALQAGFENGAVHE
VSGFEAMVALFDSTITFHARYQQRRDVATMVDLLVLDAENPRSLAWVTQTLRGRIARLAG
SAPGKLTALSYELPDPASWTLEHLCAAGPDANYPALVELLANCESAAYHVSDAIGTRYFT
LTSESLRSVGA