Protein Info for GFF2686 in Variovorax sp. SCN45

Annotation: Large protein containing transglutaminase-like domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1175 PF08379: Bact_transglu_N" amino acids 7 to 84 (78 residues), 87.3 bits, see alignment 1.4e-28 PF01841: Transglut_core" amino acids 130 to 246 (117 residues), 59.7 bits, see alignment E=4.8e-20 PF09899: DUF2126" amino acids 276 to 1174 (899 residues), 1326.2 bits, see alignment E=0

Best Hits

Predicted SEED Role

"Large protein containing transglutaminase-like domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1175 amino acids)

>GFF2686 Large protein containing transglutaminase-like domain (Variovorax sp. SCN45)
MSIHAALHHVTHYKYDRLVQLGPQVVRLRPAPHCRSNVISYSLRVEPAEHFVNWMQDPFA
NYQARLVFPEKTREFKVTVDLVVEMAVYNPFDFFLEPQAENFPFKYTASQAEELAPYLVA
DPVTPLLEAYLDKVDRKEQRTIDFLVGINQQVQKDVNYLIRMEPGVQTPEETLTNGSGSC
RDSGWLLVQLLRHCGLAARFVSGYLIQLTPDVKALDGPSGTTVDFTDLHAWCEVFLPGAG
WIGLDATSGLLAGEGHIPLACTPTPSSAAPIEGGVDESEVEFGHEMKVTRIYESPRVTKP
YTEEQWAEVLTLGDAVDARLKAGDVRLTMGGEPTYVATSDRDAPEWNTDALGPTKRGYAT
ELVHKLRAEYGKGGFLHFGQGKWYPGEQLPRWALSIFWRADGQTLWHDPDLFADERFPTH
YTSEDARRFTTVLAHKLGLTERYIQPGYEDIYYYLWRERRLPVNVDPFDSKLDDELERVR
LRRVFTQKLDAVIGYMLPIEPGNANGDAPALAGPAWKTGPWFLRDDRLYLIPGDSPMGYR
LPLDSQPWASKGDYPYLIERDPTAPRGALPSAADYRARYAVSAPGNGGANGTGASLGDVP
YAFGTPPVVPASLRMQSPGSAGEGDAAATAADGAADRSATRQPLRGESAHWVTRTALCVE
VRDPRRANGPAAEKKGNASGVLYVFMPPLARLEDYLDLVAAVEATARDLGVRIVMEGYPP
PRDPRLKMLAVTPDPGVIEVNIHPAHNWKELVAHTEFLYNAAFETRLSAEKFMTDGRHTG
TGGGNHFVMGGATPADSPFLRRPELLASLLLYWHNHPSLSYLFSGMFIGPTSQAPRVDEA
RNDQVYELEIALKEIAKNREIYGQNMPAWLVDRTLRNILIDVSGNTHRSEFCIDKLYSPD
SSTGRLGLLELRAFEMPPHARMSIAQQLLIRALVARFWDEPYKAPVTRWGTELHDRFLLP
TFVKMDFDDVISEMRQAGFAFDPDWFAPHFEFRFPLVGQMQAMGVELSLRNALEPWHVMG
EEGSAGGTVRYVDSSLERIEVRVTGLNESRHVVTVNGKVLPLQPTGVTGEFVAGVRYKAW
NPPSALHPSIKAHAPLTFDLVDTWMKRSLGGCQYFVAHPGGRNYDTFPVNAYEAESRRHS
RFTRTGHTPGLMRTPPATIELPGSREFPFTLDLRR