Protein Info for PS417_13580 in Pseudomonas simiae WCS417

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF12852: Cupin_6" amino acids 2 to 155 (154 residues), 81.5 bits, see alignment E=1.1e-26 PF12833: HTH_18" amino acids 193 to 269 (77 residues), 68.5 bits, see alignment E=7.6e-23 PF00165: HTH_AraC" amino acids 237 to 269 (33 residues), 31.4 bits, see alignment 2.4e-11

Best Hits

KEGG orthology group: None (inferred from 61% identity to pmk:MDS_1589)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U1R3 at UniProt or InterPro

Protein Sequence (285 amino acids)

>PS417_13580 AraC family transcriptional regulator (Pseudomonas simiae WCS417)
MDRLSTLLVHFGIGADTFHSGPLHGALDTRDLQQRGRVYLLKEGQASLEMPDGTLRIPEP
SLVLVPRPLPHRLVAAKAERAQVVAASLRFDGGIDNPLSVALTDTIVMPLQQIPMIAGTL
DWLFDEAFAEHCSREAVMNRLFELMVIQFLRHMMAYHSMTTGMMSGLADLRLARAMTLLH
NNPERPWTVQEMAVESNMSRASFAAHFHKVVGQTPADYVLSWRVSLAQKRLREGRPIALI
ADEVGYESPSALARAFRRKIGTSPREWLQLQAPLRVEHAAAVAGG