Protein Info for GFF2649 in Variovorax sp. SCN45

Annotation: putative autotransporter protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2280 signal peptide" amino acids 1 to 53 (53 residues), see Phobius details PF13018: ESPR" amino acids 1 to 48 (48 residues), 56.5 bits, see alignment (E = 4.5e-19) PF12951: PATR" amino acids 410 to 436 (27 residues), 21.6 bits, see alignment (E = 2.7e-08) amino acids 607 to 636 (30 residues), 35.1 bits, see alignment (E = 1.6e-12) amino acids 677 to 706 (30 residues), 42.1 bits, see alignment (E = 1.1e-14) amino acids 872 to 901 (30 residues), 40.2 bits, see alignment (E = 4e-14) amino acids 940 to 969 (30 residues), 45.3 bits, see alignment (E = 1e-15) amino acids 1008 to 1038 (31 residues), 30.3 bits, see alignment (E = 5.3e-11) amino acids 1077 to 1106 (30 residues), 38.7 bits, see alignment (E = 1.3e-13) amino acids 1378 to 1406 (29 residues), 37.9 bits, see alignment (E = 2.3e-13) amino acids 1442 to 1469 (28 residues), 27.8 bits, see alignment (E = 3.1e-10) amino acids 1671 to 1699 (29 residues), 32.9 bits, see alignment (E = 8.1e-12) amino acids 1761 to 1789 (29 residues), 42.7 bits, see alignment (E = 7.2e-15) TIGR02601: autotransporter-associated beta strand repeat" amino acids 607 to 637 (31 residues), 40.8 bits, see alignment (E = 1.5e-14) amino acids 676 to 706 (31 residues), 41.1 bits, see alignment (E = 1.1e-14) amino acids 872 to 902 (31 residues), 38.4 bits, see alignment (E = 7.7e-14) amino acids 939 to 970 (32 residues), 42.4 bits, see alignment (E = 4.5e-15) amino acids 1011 to 1033 (23 residues), 23.1 bits, see alignment (E = 5e-09) amino acids 1076 to 1107 (32 residues), 38.3 bits, see alignment (E = 8.4e-14) amino acids 1377 to 1406 (30 residues), 32.9 bits, see alignment (E = 4.4e-12) amino acids 1441 to 1472 (32 residues), 26.6 bits, see alignment (E = 4.1e-10) amino acids 1670 to 1701 (32 residues), 34.2 bits, see alignment (E = 1.7e-12) amino acids 1761 to 1791 (31 residues), 43.2 bits, see alignment (E = 2.5e-15) PF18883: AC_1" amino acids 1819 to 1936 (118 residues), 73.4 bits, see alignment 2.2e-24 TIGR01414: outer membrane autotransporter barrel domain" amino acids 1836 to 2280 (445 residues), 192.4 bits, see alignment E=1.5e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2280 amino acids)

>GFF2649 putative autotransporter protein (Variovorax sp. SCN45)
MNKSHRSIWNSALGAWVAVSENTHARGKKSRRAVALAVGAASLLMTAGPSFAGGDGGGGG
FLVNGKYGTGQTAGDSTTGAGGNGGQGDQSAAGAVGGNLGTNGSNGVSAAYGSSPDRLDG
SGGGGGGSARTGSSPVTTTIKAGNGGNGGTGGYSYVDKKGATQLSSPGGAGGGGGGGSVL
ATQSFEVKASGVLVGGNGGNGGGTVAKTSSLAGAGGGGGAGVLVVPVGGVTITNAGSITG
GNGGSGIAAVGIDPRTKAAIYGGAGGNGEGGALGGTQLGAAAQGGAGIVGSNLTIINSGT
ISGGLSGDGTTRANSIQMGGNNNSLTLRAGSVLNGGVVAQGTGNKLFLEGTNTESDTFQG
FSSINAASGSKWTLTGKFQPTGNLAVNVDGTGTTPAQLAMNGVISGTGSLTADGGGTLAL
GATNTYAGGTSIKNGTTVQIGTAGALGSGTVSLEGGKLTATSSLNLANSLSFAVGQRSTV
AAASGKTFGIGGTLTLNGSATAVFGSTSENGTVRLDSGTTAVTSSAAVVVAGGTLQVADA
ARAGTIFSNVASTTVSSGATLDLNGYNVTVANLQGAGTLRTRTGNGAQTTTLQSGNFSGS
ITGAGQLVKTTAGTLVLTGTNSYTGSTTISGGTLQLGDGGNTGSIDSTSSITNNAALVFN
RSDAVSFTRAIGGTGSVTQSGSGTLTLSGASTYSGGTTVSGGTLQVAAASALGSGGLTMA
GGKLAATSTMTFSKAVGFTAGTASTVAAAGNRTLTLAGSLSLGANATATFGSSTQAGVVS
LTGTSATVDSTAAVVVAGGTLRAGNAALASTVFGTAASTTVNSGATLDLNDLNVSIHNLQ
GAGALQTGSKNSQTTTVEGGQFGGVISGAGKLVKTGTDTLTLTGTNTYGGGTTISAGTLQ
IGNGGTKGSISGNIVDNGVLQFNRSDDIAYAGGISGTGSLTKSGAGKLTLTGTNTYDGGT
TISAGTLQVGNGGTTGSIAGNITNNAALVFNRSDSYTVAGDIDGTGSLTDSGAGTLILAG
TNSYTGGTTIGKGATLQVGNGDKSGTLTGAVTANGNLVFDRSDDSGFTGTVSGAGSLTKN
GAGELEITGANTYTGNTWVNGGTLRVNNTSGSATGTGSVQVGSGATLAGGGTISGAVTVA
DGGSLAPGNSPGTLTTGDLNLANGSFLNYHLGAVGEDPLNDLIQVNGNLVLGGTLNVTET
AGGSFGPGLYRLVKYTGSLSDNGLSIGSTPVAAGDLYVQTSVAKEVNLINSTGVQLGFWD
GGDTVNNGSVGGGSGTWRIGSPGSPNDTWTNSEGGYNATWKPNQFAMFGGTAGTVTVDNS
GGDISIGGAQFYSDGYVVQGDALTLGNAHTVIKVGDGTRSGASMTATIASQLTGAGGLTK
DDYGTLVLTGANNYTGGTIVSAGVLQGNTTSLQGDIVNNANVTFDQSTGGTFGGTMSGSG
SLRKIGMGDLTLATANTYTGGTKIDGGSVSANVSGALGTGPVDVNGNGYLAFNGNAGAGD
LRFTTAAASTGVNGGAIEFKDNTSAERASFLNYKGGSVTFTGNSTAGDAVFDNRGGSVTV
WSNATAGNARIVNSAGGSTNIWDDATAGRATIVNEATGSLDIRDQATAAQATVVNKTGAV
VNIRGLTTAGTSIGSLEGGGRVLLGNKTLTTGGLNTSTEISGVISGVGGSLVKEGTGTLT
LSGANTYTGGTALLKGRLNLGNAQALGTGELAMDDGTEIGFIAPGMTIANAIRFTGNSDP
IIDTGAFDAGLSGAISGAGFITKIGTGTLTLSGANSYTGATDVAQGTLRAGAANTFSAAS
AHNVAAGATLDLAGYSQTVASLTNSGTVSLVGSVPGTTLTVNGAYVGNGGVLKLGTTLYF
NGPPSDRLILNGPTASASGKTTVQITNIGGLGALTNGNGIEVITAQNGAKTTAQTTKDAF
SLADGHVDAGAFEYRLYAADALGQGENWYLRSAQKGVTYYRPETSLYAALPNQLRQGSLA
MLGDVRKRVGDDDVKGTAPSATGSERRAWARVLSTDIDIQQGGTVSPTSKGRLTGFQAGT
DLLATPNWRAGIYVGQLDGDARVSGYASGVQNLAVGRNDLRSQYVGVYGTYTSDSGFYAD
AVVQSGRHRYTVEPLMGIGAAGKGNSLLGSIEVGQAFPIGSSGWTVEPQLQLIHQHMDLS
NSAILGAVVQPQVDSGWLARAGVRVKGEIDTGMGMLQPYGRVNVYKTSRGTDVARFVNGA
TTTNIAAPIGGTSTELAGGFTLALNPSTSLYGEVGKLWSSGGDAKVKSGINGSLGVRVKW