Protein Info for GFF2649 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 PF13579: Glyco_trans_4_4" amino acids 24 to 172 (149 residues), 39.5 bits, see alignment E=1.9e-13 PF13439: Glyco_transf_4" amino acids 24 to 182 (159 residues), 43.1 bits, see alignment E=1.2e-14 PF20706: GT4-conflict" amino acids 199 to 361 (163 residues), 40 bits, see alignment E=6.3e-14 PF00534: Glycos_transf_1" amino acids 204 to 360 (157 residues), 94 bits, see alignment E=2e-30 PF13692: Glyco_trans_1_4" amino acids 207 to 346 (140 residues), 87.8 bits, see alignment E=2.1e-28

Best Hits

KEGG orthology group: None (inferred from 66% identity to sjp:SJA_C1-28830)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>GFF2649 hypothetical protein (Sphingobium sp. HT1-2)
MFHARQVAAQSPFAVVYLYRPGDGGLDRVAIQLANHLHRRGLRVELWLAHLDGPLAGMID
PALTVRRVCAPRRVRRLSMIAQFLPLAAMVRRHRPDVFYSAGNQSNMLVAAATLGTQTRA
VGRISNPIVRPGQQGLSAWARKTRFRAIARACSMTIVMGETDRQLLAEEGPFGGRDVRLM
PRPTVTRLMEQACNDRGTACCPQRPAQLLMVGRLAPQKDQATALAALAQLRGRDWRLRIV
GQGPLRAQLEAQCARLGLSDRVEFLGFVDCPHRMASLFAEADLLLQPSCWEGLAGTMIEA
LGCGAGVVATDCTRNIHPLLAAAGQHPPVPVGHVDGFARAIEWALTHPAPPEQLAQAVRE
HGLDRALDTYMRALMTVGARELPVGVALQAFP