Protein Info for GFF2646 in Xanthobacter sp. DMC5

Annotation: Inner membrane transport protein YdhP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 35 to 59 (25 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 100 to 123 (24 residues), see Phobius details amino acids 132 to 151 (20 residues), see Phobius details amino acids 158 to 178 (21 residues), see Phobius details amino acids 189 to 208 (20 residues), see Phobius details amino acids 229 to 252 (24 residues), see Phobius details amino acids 264 to 285 (22 residues), see Phobius details amino acids 295 to 312 (18 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 353 to 374 (22 residues), see Phobius details amino acids 383 to 406 (24 residues), see Phobius details PF07690: MFS_1" amino acids 38 to 369 (332 residues), 129.9 bits, see alignment E=5.7e-42

Best Hits

KEGG orthology group: None (inferred from 76% identity to ara:Arad_9838)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (415 amino acids)

>GFF2646 Inner membrane transport protein YdhP (Xanthobacter sp. DMC5)
MSACPTAALPVDINRSSLRPHARDAAADRGGTRTLLALALGSFVIGTSEFASMGIIQLFS
EGLGLTVPQATGAITAYAFGVVIGAPLVTLTAARLNRRTLLLALMALFMAGNLLSAVASD
LGWLMAARFISGLPQGAYFGAGAVVAAHVVGAGQAGRAFAIVMTGLTVATIFGSPLATFM
GQTLGWRETYLAVAILAALALAALRQWVPRTPALDGVPVLQELSALRKTSVWGMMLVAAI
GVGSIFAVYTFIGPIVTDAAGLPATLIPVALAVFGLGMTAGNLFGGWIADRYPARGIVIG
YGSALVVMAALATGGSHIWLLLPGLFGVGATMMVAIPTIQVRLTTFAPEAPTLMGAMNLA
SLNAANALGAWSGGLAIDAGFGLLSAVWAGFGLTLAGLTLFGLTLLGRGRARASA