Protein Info for GFF263 in Variovorax sp. SCN45

Annotation: Secreted and surface protein containing fasciclin-like repeats

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF02469: Fasciclin" amino acids 51 to 185 (135 residues), 119.7 bits, see alignment E=4.6e-39

Best Hits

Swiss-Prot: 50% identical to Y1483_SYNY3: Uncharacterized protein sll1483 (sll1483) from Synechocystis sp. (strain PCC 6803 / Kazusa)

KEGG orthology group: None (inferred from 92% identity to vpe:Varpa_2806)

Predicted SEED Role

"Secreted and surface protein containing fasciclin-like repeats"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>GFF263 Secreted and surface protein containing fasciclin-like repeats (Variovorax sp. SCN45)
MQRKLHRLAAVTLAIAMSAGAVSALAASVMVGGAPMLPTKDIIDNAVNSKDHTTLVAAVK
AAGLVDTLKGPGPFTVFAPTNEAFAALPAGTVDNLLKPENKDALTGVLTYHVVSGKLDAA
ELKKEIKAGKGSAELKTVAGGVLVAKEKGGKIMITDEKGGTATVTIPNVYQSNGVIHVVN
KVLLPK