Protein Info for PS417_13345 in Pseudomonas simiae WCS417

Annotation: MFS transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 459 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 46 to 67 (22 residues), see Phobius details amino acids 76 to 97 (22 residues), see Phobius details amino acids 103 to 124 (22 residues), see Phobius details amino acids 136 to 160 (25 residues), see Phobius details amino acids 166 to 185 (20 residues), see Phobius details amino acids 197 to 216 (20 residues), see Phobius details amino acids 228 to 245 (18 residues), see Phobius details amino acids 264 to 289 (26 residues), see Phobius details amino acids 295 to 318 (24 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details amino acids 357 to 380 (24 residues), see Phobius details amino acids 401 to 420 (20 residues), see Phobius details amino acids 428 to 448 (21 residues), see Phobius details TIGR00711: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family" amino acids 10 to 416 (407 residues), 253.8 bits, see alignment E=1.6e-79 PF07690: MFS_1" amino acids 15 to 406 (392 residues), 184.1 bits, see alignment E=1.9e-58

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UHS4 at UniProt or InterPro

Protein Sequence (459 amino acids)

>PS417_13345 MFS transporter permease (Pseudomonas simiae WCS417)
MDTSSKKKLTLFATCLGFVVVLLDVSVVNVALESFKAEFATDVLQLQWIVNAYTLLFASF
LLTGGALGDRFGHKKVFLWGYVVFTLASLGCGLAQTLPSLIGFRALQGIGAALLVPTSLA
LVRITFEVPAERSKAIALWAGVAGIALAAGPVVGGLLIGVFGWRSIFFINLPIGLIGIVL
CLINAPRIPANHKGGFDLWGQLLALFTLANLTYTVIELGRQKGLDQRVVMHALCFLGGLL
GFLWVESRTARPMVPLAVFNNAAFSLASILGVIVNFVFYGLIFVFSIFLQQVNHYSVINT
GLAFIPMTGVLFFGNQLAARWLPKLGERRLLSLGLAIALLGVVALTPFVGGAPYAHIAVQ
MFVIGFGISLTVPTLTATAVNHVSSDKSGVASAIVNASRQVGGLIGVAIFSLLINVADAA
QFGHGFTQVIVLSSLLLAAGWALTLVLLRKQPMAAQSAA