Protein Info for GFF2619 in Variovorax sp. SCN45

Annotation: Rhs-family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1617 transmembrane" amino acids 55 to 80 (26 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details PF20148: DUF6531" amino acids 356 to 437 (82 residues), 52.8 bits, see alignment 6.2e-18 TIGR01643: YD repeat (two copies)" amino acids 685 to 725 (41 residues), 22.1 bits, see alignment (E = 1.6e-08) amino acids 747 to 787 (41 residues), 42.7 bits, see alignment (E = 4.9e-15) amino acids 791 to 829 (39 residues), 24.5 bits, see alignment (E = 2.8e-09) amino acids 864 to 905 (42 residues), 28 bits, see alignment (E = 2.2e-10) amino acids 906 to 946 (41 residues), 17.8 bits, see alignment (E = 3.7e-07) PF05593: RHS_repeat" amino acids 705 to 741 (37 residues), 35.7 bits, see alignment (E = 1.3e-12) amino acids 747 to 783 (37 residues), 44.8 bits, see alignment (E = 1.8e-15) amino acids 789 to 825 (37 residues), 33.4 bits, see alignment (E = 6.9e-12) amino acids 864 to 901 (38 residues), 27.4 bits, see alignment (E = 5.3e-10) amino acids 888 to 921 (34 residues), 22.7 bits, see alignment (E = 1.5e-08) PF03527: RHS" amino acids 1378 to 1413 (36 residues), 61 bits, see alignment (E = 1.2e-20) TIGR03696: RHS repeat-associated core domain" amino acids 1405 to 1486 (82 residues), 93 bits, see alignment 1.2e-30

Best Hits

KEGG orthology group: None (inferred from 84% identity to vap:Vapar_5681)

Predicted SEED Role

"Rhs family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1617 amino acids)

>GFF2619 Rhs-family protein (Variovorax sp. SCN45)
MADQPPQNNDAQGAQAKERERQVAVAPLNTIGVEDIGAGAAKIDRWLRKLTNDYVTLNVL
TTFAGSLPIIGNIMALIDAVWDIVEMVTKKAYSDVLQWVSLAINLLGVIPFPPATGAARM
SLRPMLHLLKQEIAKSAKSVVPNLGEAFMAVVITHLNDTIAGTLDKFVDEALGYLDGFLK
SCAEKVDGIADALIGALQVALGEKPVFTTGAVAEKNTYDPNTQSTWSRMMAAAAEAAKKS
ANYVAATASHYALPDSAKVLIRDAVSSLTDIKGLARQQIMRLGDESLQYGIKWMIKILKD
ALLKRKGKHGATLSATNGAKVQDKKPGGEQGATTAQAPASGDPGCKSCATGAAGGAISLA
TGCESFSHTDFSLAAPLPIDWTRTYRSNLGAFDQGSLGARWVTPYSTRVDIAKALKGRRQ
GRMSLIYHGIDGRGHAFPLLAVGQSHHDPIEEMTLTRLSERLLVADFGKPVPAGESADWR
ETYELVDTVPAKAASQGKQHFRLVAQHTVGGAAIGLRYDHVIAATGEQVLSDIVSKQGEV
VIAHVGTQPDASTGLIKSLWELKGGQVVRQLAAYTHDGEGDLVTAQDENGAAWQYSYSHH
LVTRYADRTGRGMNLQYDGTGVDAKAVREWSDDGSFALTLEWDRNIRLTYLTDAAGGETW
YYYDVLGYTYRIIHPDKLEEWFLRDDAKNITRHIHTDGTTDDYVYDAKGNLKTHIRADGS
SIHYEYDARHRVTGILDAEGGVWKREHDAQGNLVEETDPLGHKTGYAYDEAGRPVRITDA
KGGSKTLEYMPAGQLASYTDCSGKTSLWAYDGRGRLVKAVDAAGNATRYRYTPVVETATQ
GDGNHPGQLEEIVLPDDTREHFAHDAEGRLLCHTDALGRRTRYSYTRAGLVAGRVDAAGH
TLRYHWDLMGRLTELHNENGSRYDFSYDPVGRLLEEVGFDKKSTQYRYEPTTGVLAEVIE
AGQGTTLEFDALGRLGERRAGGEAERFAYDGNGRLVEASNSDARLQWFYDRAGNLVREHQ
HYLESSRTAVWRHGYDELNQRVTTIRPDGHITQWLTYGSGHVHGLLIDGQDVLGFERDDL
HREITREQGNGLTQKQRYDPAGRLLEQQISQTRPGAIESLGGIRRSYAYDKAGQLVAIGD
SRRGNLSYRYDPVGRLLEANSRLGRETFAFDPAGNIGHPSSDTEGDAQAAAGRITNRVAV
RLGGDGRSMAGRLMDNLLKDYAGTHYKWDERGNLVERSRNGEKTVFTWDGYNRMRSAETF
GETTSFSYDPLGRRIAKRTGHACTLFGWDGDTLAFESTQSTEARQEQMWRGDSVHYIHEP
GSFVPLMQIRQAQAVALSETTDVKALIADNGGRYDIEQDPLWNGEQSRTPAPFGKEEIAF
YQCDHLGTPQELTDHEGRVAWSASYKAWGEARQAISEAGRRAGFRNPIRFQGQYWDDETG
LHYNRYRYYDPLAGRFISKDPIGLKGGVNALFYAPNPVEFIDPLGLQGNRANRRAGKILA
DNDAATGGHAYSRHGAHTTMPEQERRAMTGVPPDNPCKIPQTHGPDSTRFIRNTDQLDAI
QKGRSAMNASGQNSATFDMGRTIGEGYRSGGGCPITTSRVTVRRNNSGDVYTAYPQL