Protein Info for GFF2617 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 PF11843: DUF3363" amino acids 278 to 402 (125 residues), 119.1 bits, see alignment E=1.3e-38 amino acids 400 to 577 (178 residues), 188.6 bits, see alignment E=9.5e-60

Best Hits

KEGG orthology group: None (inferred from 91% identity to xau:Xaut_0588)

Predicted SEED Role

"Type IV secretory pathway, VirD2 components (relaxase)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (579 amino acids)

>GFF2617 hypothetical protein (Xanthobacter sp. DMC5)
MADDREFRVRPGRIRSTRTQRARPFIAQALAAAQKAGGHVSRSGRISSGSRSHVGRGRTA
SVVANRLLTGRSRVVVVKTRVVRHTARATPLSAHLSYLRREGVTRDGEKARLFGPRAEEG
DGRAFAERCADDRHHFRFIVSPEDAADMADLRSFARDLVGQMEKDLGTKLDWVGVDHWNT
DNPHLHILVRGRTDDGQDLVISRDYIKEGMRARAQEFVTQELGPRTDLDIHRALEREVQT
EGWTQLDRQLVRDQREAGIIDVARDADGRPDAFLPMKVGRLRKLETLGLADEIGPGQWVI
DEKAEATLRALGERGDIIKRMHRALTAQGIERGTAGYVLAGESLGAPIIGRLVDRGLDDE
LRGTAYAVVDGVDGRTHHIRLSDLDATGDGTRGSIVELRRFEDGRGQPRVALAVRSDLDI
EQQVAASGATWLDRQALSRAPASLSEGGFGAEVRGAMERRADHLVREGLAERQGQRVAFA
RDLIETFRRREIDALGEKLSAETGQPFNRSGAGDYVSGTYRQRFALASGRFAMLDDGLGF
QLVPWTPSLEKQLGKHVSGVARADGGIDWSLGRKRGLAL