Protein Info for PS417_13330 in Pseudomonas simiae WCS417

Annotation: autotransporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 551 PF03321: GH3" amino acids 34 to 318 (285 residues), 108.1 bits, see alignment E=8.1e-35 PF23571: GH3_M" amino acids 344 to 420 (77 residues), 55.8 bits, see alignment E=6.1e-19 PF23572: GH3_C" amino acids 436 to 515 (80 residues), 31.8 bits, see alignment E=3e-11

Best Hits

Predicted SEED Role

"probable auxin-responsive-like protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TXI3 at UniProt or InterPro

Protein Sequence (551 amino acids)

>PS417_13330 autotransporter (Pseudomonas simiae WCS417)
MGKMDSWIGHWQRGVPTFKAECAQAQANYLERLDKPLKTQEHVLEDIIHVCQKSLFWKEN
GFQVSHCNGRITRTNIPVMTYEGFRDILVREGQQKGGILSCSPVVRWLKTSGTTGQSKRI
PYTLHWIRQYRVPAIKAMWGFFAHDYPALHANPWATLDTQTVRDPSNEYVEGLPYQAISN
RHPQIGSGDWNPPWYEAPWFTPTPDASHEQKMYARLLWTLGEDVRLLTAINPSTLLSLHH
CLLENRERLLRDLHDGAHAGSLMRAADPAAAHRLESVLARDGVSLPDVWPGLERFSCWTA
ASAKLYKPQLERIMGQAKVLPFMSCGTEGVVTLPVDDDQDSQPLAVDQAFFEFIPVSVDM
DALIRDQVQPQTVSLDQLKEGDEYHLVMWQGNGMVRMYTGDIYRVHGYYRGVPRISFSRR
NGVMHSFTGEKITETQLHEAVQMCGIPNAGLYLCAPVWNETPYYAVAIEAAGAPCGESER
LSQLLDGHLQAINIEYESKRSSKRLGQIKVITVPGNAISMAIEQEKAARKTLQIKYKPFQ
PDLSLLGIQQL