Protein Info for GFF2614 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Annotation: FIG074102: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 PF07063: HGLS" amino acids 14 to 400 (387 residues), 535.9 bits, see alignment E=3.7e-165

Best Hits

Swiss-Prot: 88% identical to YDCJ_ECOLI: Uncharacterized protein YdcJ (ydcJ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to seg:SG1495)

Predicted SEED Role

"FIG074102: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>GFF2614 FIG074102: hypothetical protein (Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868)
MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVLENNPKLHEQLANADEL
ARLNVERHGAIRVGTAEELSTLRRIFAIMGMYPVSYYDLSQAGVPVHSTAFRPIDEASLS
RNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCRQLLDEYDEQGGFSAAQAEEF
VRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFPGCHINHLTPRTLDIDRVQAMMP
ECGITPKILIEGPPRREVPILLRQTSFKALEEQVLFVDEKQGTHTARFGEIEQRGVALTP
KGRRLYDELLHKAGTGKDNFTHQLHLREVFNAFPDSEFLLRQQGLAWFRYRLTPSGEAHR
QAIHPGDDPQPLIERGWVIAQPITYEDFLPVSAAGIFQSNLGDETLARSHGNASRDAFEQ
ALGCAVRDEFSLYQEAEERSKRRCGLL