Protein Info for PS417_13280 in Pseudomonas simiae WCS417

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 715 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF07715: Plug" amino acids 66 to 172 (107 residues), 67.3 bits, see alignment E=1.6e-22 PF00593: TonB_dep_Rec_b-barrel" amino acids 266 to 680 (415 residues), 127.4 bits, see alignment E=1.4e-40

Best Hits

KEGG orthology group: None (inferred from 44% identity to pde:Pden_1499)

Predicted SEED Role

"iron aquisition outermembrane yersiniabactin receptor (FyuA,Psn,pesticin receptor)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TXH7 at UniProt or InterPro

Protein Sequence (715 amino acids)

>PS417_13280 TonB-dependent receptor (Pseudomonas simiae WCS417)
MSSALFIQPLRRPLGWRANVLTQAMALGLSSQMCTAYAADYQPEASAESIELAPLTVSAR
LSQESAKDIPFGLSVIDGKTLETRRLRTLEDALRTTPGVEVNSWGGANDANVRIRGVGSL
NQMSMDDGSVVLNVDGVPMSVRNAALATLDVQQVEVLKGPQGTLLGRNSEAGAINVTTRK
PTRELEGYVRGEVGNQGQFMTEGAVGGPLTDSLAGRIAVRRSGFDNWVDDQQDGDPLTKP
RDLALRGSLLWDNDQGTTGLLTAERQRAEHYAGLELLRPFGNRPSLDYTPGTFDGNQKTN
ERYSFELNHDLAQSRITSISAYTSTDFNAVKGYDRNITRALYGSAFEYLIEDSAHERVWS
QDLRLGSLADADVFWVTGLNLSRSERSFDSNNLTNGAQQLRDFSTNSYAAYGEVTYPIAE
DWKLTTGLRHTWDRKTYGGDYSTGGALVSDSRRLQDNYSTGRVALSYALTPQTNVYAVLS
RGYKSAGFNDYATSVKDSEPYKAAKVNSAELGFKHESAGGDLSLEGALFITRVQDDHLLG
YDFNTLAVSAVNADTRSKGAELSTTWHVTDELTLGSAVSYTNAVVTSDAPGVSGGDVAAG
SRVPDVPLWSGNFSVAWQKNLGALLGLPAPRLNTLLNYRVQKNRPADPQNHYDLKGYAKL
DLHLGLESGGSEVYLWADNLLDARYDLYGSYSTDQVLTGMPGRGRSAGVGYSYQF