Protein Info for PS417_13275 in Pseudomonas simiae WCS417

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1017 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 60 to 81 (22 residues), see Phobius details amino acids 105 to 139 (35 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 249 to 269 (21 residues), see Phobius details amino acids 326 to 348 (23 residues), see Phobius details amino acids 362 to 385 (24 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details amino acids 448 to 472 (25 residues), see Phobius details amino acids 480 to 503 (24 residues), see Phobius details amino acids 524 to 549 (26 residues), see Phobius details amino acids 567 to 588 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UKX5 at UniProt or InterPro

Protein Sequence (1017 amino acids)

>PS417_13275 membrane protein (Pseudomonas simiae WCS417)
MNTFALLLRETWVEARAGLRSGIPLLVFLGLTGYLLMSLTNADYVQKMGASDIARNAPSL
IYLMSCGCMFFLFFAWAWVFAQPALRDRKAQLEEVLLTLPLSLPALLWGRFIGAALVGGL
LASSLIVGFLVSPVLGWLGWVPAASIGAPVWSALGFAWIALLLPVSTGIGALYYLLALRS
RGLAAPFGLATVLMLLWMFAVVVLKGGHINPLLAASLDPSLFTFAQAQIETWSAAQKSQA
LLALTPGFWLNRALWCVLPLLVLAVVLARTTRQGLMGRRSGAVLAEPPMLRSSDVQLSGP
LAASCWAHAVWHEARWQVRQLFARRIWWVALGLLLVMGVLSGFVHGVWHARGPMVPRADL
TLPLLSSALFLVIAFIVAALVGLVCRRDDVEGLGAMLQATPAPTWLRLFGRTACVLLATV
TLALVPGIASLLISAIAAPDSLAPGFVLIYQALVFAPPLLELATLTVLVHALIRRSGLAY
AMSMLLTFFLVLNHELGLVSYPAYAMGIPAHVALSQLTGWAPWLPYLGTLAGWKLAGCVV
MVGVAALVLPRGPERRRFADLRQPLPLAMLALGALGLLGSGVALQRYLVEQGDYQSVAEE
RAERAAWEQRWLAGAAAWQVAGGRVQLRVDSTARQVEGQWTLDAMVARQLDAELPPGLRV
TAVSVMGQPVTFEQATEHLRVPLAQCTTNACSVELNWIVSANGWPSEGEAYWLGPHGVWL
EARRVMPRLGLDSERLLRAPVQRSEADLTPEVPTLATNSAVAVEAVAPAGDWQWHVEIDG
QAFSGHSSAPMDFAYSLQARADASRQQTAVEVREDLDLMSACVARRLGSRPAVDDVSLWP
TGMGASRLSHGHLLLAQSPDWDAAAAGVGRSARRAHIAELLARRMLVDASDLRQVPGYLW
LSQGVAGAIALLCVADVDGPEARAVLVKLMADDLTRALGNDGEPVGTLADAREHGWAATY
AVLASLGWTAAQSPEQLKAMTAAIRNGQGWPAAIQPLLGAPDPQAIAAALTRWGPAP