Protein Info for PS417_13265 in Pseudomonas simiae WCS417

Annotation: peptide synthetase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2139 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 614 to 627 (14 residues), see Phobius details amino acids 723 to 732 (10 residues), see Phobius details amino acids 1755 to 1773 (19 residues), see Phobius details PF00550: PP-binding" amino acids 12 to 68 (57 residues), 28 bits, see alignment (E = 4.1e-10) amino acids 1037 to 1099 (63 residues), 27.5 bits, see alignment (E = 6e-10) amino acids 2062 to 2125 (64 residues), 52.3 bits, see alignment (E = 1.1e-17) PF00668: Condensation" amino acids 120 to 516 (397 residues), 98.1 bits, see alignment E=1e-31 amino acids 1158 to 1529 (372 residues), 79.7 bits, see alignment E=3.9e-26 PF00501: AMP-binding" amino acids 553 to 882 (330 residues), 226.6 bits, see alignment E=9.6e-71 amino acids 1571 to 1914 (344 residues), 270.6 bits, see alignment E=3.9e-84 TIGR01733: amino acid adenylation domain" amino acids 575 to 953 (379 residues), 353.5 bits, see alignment E=7.4e-110 amino acids 1594 to 1981 (388 residues), 392 bits, see alignment E=1.5e-121 PF13193: AMP-binding_C" amino acids 1965 to 2031 (67 residues), 32.3 bits, see alignment (E = 3.1e-11)

Best Hits

Predicted SEED Role

"iron aquisition yersiniabactin synthesis enzyme (Irp2)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U1L4 at UniProt or InterPro

Protein Sequence (2139 amino acids)

>PS417_13265 peptide synthetase (Pseudomonas simiae WCS417)
MATPSTSTAILLRQSLSDALGLPADQVPLEANLIEWGLDSVTLIRLAGQWRRQGLAARFA
DLVADPRLCAWLALLDTAPTATAPISTSIDDSLPFELAPMQHAYWIGRAPGQQLGGVAAH
FYNEFDGQDVDPIRLEAAVRALLARHPMLRAQFLDDGRQQILAHSPWPGLTVHDLRQASA
EQVQQRLAALRAELSHRQLAVEQGQVLDIQLSLLPNGTRLHLNLDMLAADALSLRTLLGD
LVQLYRQHPLPALDYNFARYLADLRQEQNSAEQRDRHQQARDYWLQRLDQLPGAPSLPIK
PQGDDRQVCRRHHWLPPSERQAFERQAREHGLTPAMALAAVFCEALGAWCDTPELLLNLP
LFNRTPLHADVDRLVGDFTSSILLAWDGRVAGTFAARATALQRRFHSDVAHSAFSGLEVL
RELSRQRGEQVLAPVVYTSALGLGELFAEGVQASFGQPAWIISQGPQVWLDAQVTELDGG
ILVNLDAREGLFAGGVLDGMFKAYTDLLQRLCFDPASWHQAPPALVPAAQLAVRQAVQGQ
RVALPVKRLHEAFFAQARLTPTLPALLQGNPPVISYGELAERALQLAAYLEDQGIRRGDV
VALQLPKGPEQVIAVLGILACSATYLPIGIDQPEARCQKICDGSGARLLLKALPSEGPAL
EAPRPGAISDLAYILYTSGSTGDPKGVEISHLAAANTLDDLQRRLQLTADDRILALSALE
FDLSVFDLFAALSTGAAVIGIEPEAQRDALRWRELALLHHASVLNCVPALLDMLLGCAAA
DARLPLRAVLLGGDKVAPDLAPRLWAQAPGCRFMALGGATEAAIHSTLFEAFPGQPLQWH
CLPYGKPLDNVSLRIVDHQGHDCPDWVAGELWIGGAGVAEGYRGDRVRSAERFVDYQGQR
WYRTGDRARYHPDGNVEFLGRTDFQLKLHGYRIEAGEVEQALLACPGVEHAVVLLAGQQL
AAVVRQAHGPAQPAPIDLPGLAERLPAYMIPTFILGCAQLPLTGNGKVDRKALHAWLAQH
SPAQQANLTPPCGDIEQQVARAWQQLLGCSEVCREHNFFALGGDSLSATRLVRLLAEHGL
GGARIAQVFAKPVLAQFCTTLHQQVRAESARTIVADLAQRHASFPMTEVQQAYWLGRDPS
LVLGGVSCHFYREYDVEDLDLPRLQRALQRLIERHEMLRAVFDHSGQARILQQVPAFVIG
QGHASLDDLREHCAHRVFDPHQWPLFDVQAVTHGRHTRLAISLDNLILDALSILRFYAEL
DALYREPDMALAPLALSFRDYQLQCAAAPAELQAAQRFWQERLPQLPPHPQLPLAADPAS
LGRPRFERLQGQIDASAWQAILAKAQQQGLTASAVLLCAFAETLGRWSARPDLSLNLTLF
DRRPLHPQVDQIMGDFTSLTLLGYVPVAGERWVDRARRTQQSLGEALEHRCVGSVSLLRQ
LARGNGEQQVSMPVVFTSALGVPNGTAAPVDGPFARQVFGLTQTPQVWLDHQVVEANGGI
ALNWDRVVGLFPEGLVETMFAAYLHSLNWLAEHAWDSAPPDLLPQAQAQRRAQLNAPGDR
VPGDPTLHQGFFEQARQTPQSPALLWGEHGTLKYGELADRALRIAHSLMDAGVAPGDLVA
VSLAKGPQQVACVLGILAAGAAYLPVGVDQPLQRCQRILQQAGVTLMLAEHDPQLPGVKH
LNPSSALKAEPLAAPRPLAAGELAYVIYTSGSTGQPKGVEITHRAAMNTVADINRRYDVQ
ATDRGLALSALDFDLSVYDLFGLLSVGGALVLIDEDQRRDARAWLKALQQHRVTLWNSVP
ALLDMLLEANAQDRQRLDLKVALLSGDWIGLDLPQRLQDQAPSCRFIALGGATEAAIWSN
HFEVQPPLPGWRSIPYGVPLTNQAYRVVDALGRDCPDWVTGELWIGGAGVARGYRHAPQL
NAERFVDGWYRTGDLGRYHPDGLLEFLGRADSQVKIGGHRIELGEIEAALARHPCVNSAV
ALVVDNRLMAAVTASTCAEVLAQHLEQCLPAYMRPEQVLVLERLPLNSNGKVDRRALLAP
LTAAAQSRVALDEQPLSAGEHVIAELWQHLLKVPNVSRHDNFFRLGGDSLLATRFLEMLR
SRLGVELPMGQLFGAASLLEVAQTLERLPTPHTLEEGVI