Protein Info for GFF2601 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: FIG00787877: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 transmembrane" amino acids 382 to 403 (22 residues), see Phobius details amino acids 410 to 431 (22 residues), see Phobius details PF11902: DUF3422" amino acids 14 to 440 (427 residues), 491.4 bits, see alignment E=1.3e-151

Best Hits

KEGG orthology group: None (inferred from 75% identity to pna:Pnap_2555)

Predicted SEED Role

"FIG00787877: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>GFF2601 FIG00787877: hypothetical protein (Hydrogenophaga sp. GW460-11-11-14-LB1)
MIESLEPSILPADDALRAELHNEVHARPSARIRLPALVVFVAVLNEGVSREQECEHLRRL
PGQQDLALEQMQGNFLRLRFEEHTLKWERHTEFTRYSIVQPLPAQAGLGASDPDLLEALV
APPGWLRDIPGRTIAAIQLVMLHAELPEQTTSAQAALMGPAQRWFGGRTVVASQLGGGHS
WAVTDFQLQPSGFERVLVIAPPDVSETRAGRISQRLLELETYRLMALRGLPVAKALGPTL
TQAEAQLASIAAQLENKSASEQDLLDQLVSLAARVERATAEHTYRFSATRAYDALVKQRI
AELRERPIPGTQTIGEFMQRRLSPAMATVAASAQRLTSLSERISRTSALLRTRVDIVTEA
QNQQLLEKLTRGQEMQLHLQTTVEGLSIAAISYYVISLLLYLAKGAKAAGLPIQPEMAAG
ALIPLVLWAVWRTTRRIHARLGASHKA