Protein Info for GFF26 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 200 400 600 800 1000 1200 1400 1600 1800 2000 2200 2311 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 43 to 66 (24 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (2311 amino acids)

>GFF26 hypothetical protein (Sphingobium sp. HT1-2)
MGKVVTTVLVVAVAVAIVVFAPQIAAAIGASGIFGATVTAATLATITSSLVGLGVSLGMA
AAASVLRKAPSMSQSLVDRLHTSVVPSAPRKIVFGTTAAGADVRFAETFDRAGSKKDGYA
QIIALASHRINAVKEWYLEETRTWANGAIVDSHDGGVLAVQTCLEGKPGNGFSWGSGKYW
TPQSTFTGCAYLATRYKLDSKVWPSGIPSRYTTIVEGCPLYDPRRDSTNGGSGAHRIVDQ
STWTFREGSTEIGRNPALALLTYLLGYRINNKLVWGMGIPAHRIDFDNFRAYANVCEERV
LTQSGATVQRYTSDGTFSTADPHETVINGLSAAMGSCKLVDTSGVYQLVGGFDDTLGPKV
DFDENDLVAAAGSASPYLWKPAPPTRELHNIVRGRFADPSSLYQLVDWGVVETDPLPDAI
PRTLSLDLGLVTRAETCQRIAKQWLLREAKTPGVFSATFGPKAFRVQVGSLITMSLPERG
WNRKLFRVIEQVETHDLLFTMALREESSEVYAWDREEKALPATIRPDGYNPRDAIAPENL
TVSSSVIEGAGGQQVSEVEVTWLPAPSARIVGIQIESRPTGAIAWTEQAAIHDPVSGVFR
FGSNVGGVDLAVRARYRMDTGVYSEWVGADVVSAAIEIVDGQARENATTAIDTAQQAQET
ANSAVSQTSILNQQLAQLDADVAAQKETTDQLVETFGSTDSARDYATVAETAAGNSVAAN
DQAQIAAQAIDQAKAIVLSARDQTQQFSQDTAATKAATEVLKTATEQVRDQAQQAAQSAD
GSAQSVANNVAIVTARSEEAGRSAAAADASKIAAKTTVAAMLPHDFAQGFEYWGADWATG
SAAMSSDWTHLDTEYGRVARVTNAGGEKDIANAGSIPIVAGRKMRITVKWRVVDSYAGVP
AMQIFRIGMPGLAGGQFNNAAKNFGITVNAEGWGSNNGFATAIYEFSSDELANGNPQSAR
ARVLVRLNSPGVYDFQSIRFEDVTGEVIAAGHAQASAESDRSAAAHEDASSQNAAATQAD
RILAQTASGDAKTYRDQSVAVQQTVSGQVSTVTEQAGIAARAANIAASRAGGNIVGKATF
DATGRGDWGGSGTVQYDSSINAYVLQQTDRDLTEGDMIPGDWSNRNIRVSGNAAAYADFP
AGAGLNFQRADGSLSYVYWQARPAHTGYGDFSFILTLPQNVVAIRPFLNSDGNWGVAGHG
VNWRSIRMEDITQETRASGFADAGAAHAATASAANDAAGKSAQAAEVSNLASKTNSDNAQ
RSAEAGAAHEAGAASYSNNAEQQAAAAEKSKLTARATAQAMMPSDFTDISMWTGDWGGGT
GSYEGDSRFTAYDDSSEGRVLRVWNNPAWAPHVASVGREPLVRDKTYKITITWKLVGQQP
SENPVNGALYAVGIHANGTANGYIETGCTIAPGWAGWGSGWAVQSLTVTSNSLMDQGCQW
IRPLFRLDSQGVYFYKSLEIRDVTGEVNAEGSAQASAEHAASASAANNAAGQNAAATQAD
RIAAETARGATEALRDQTVTIRDDTAGFAQTATDQTNLGAQYRDQSGQSANASAGSAASA
QSANDQAGQHAAAARAERLMAETVVQSTLPSTFGDLRNFTWDYTNGTNTLADDSRYNAYD
NPTFGRIVQVQNDPAFSPHMSTKGRLALVRDKTYRITVKWLLVGYQSGESVNASMFAIGI
KPDNSQYNDVNLGVTISSGQAGWGTGQWATHTLDINANTLIDQGCAWVRPLFRLDSRGIY
FVQQIEIRDITSENTTRIYAEQTAANRAAVTDLAASVSSTALLVASYSTAGGNLLSNTDF
QTRDNWNYYSAISGVDFDLNLAGDGWHPIEENVLAIRQNNGTSSGYSEWTQTINIRGDTW
YDVSGRVAAHRTQAIEVYIQWIDANGQTPWGAPSTGSFVPSSGGTTVGSFTRYGFKAKSP
SGAVRANFIMRKFATIAGQGDSYAWFLQPQVRETFENAPSPAAYSPGRPGKMLANMSSSI
ATNQNAIATANSSLANLTTTVAANGASISTINSALSSTDGKANQALARAAVQLDVNGYVS
GWETSNNGQSSDFTVSADRFRILKPGGGARMEFINGRMIATDGASWMSVYGQPFGAGNRF
VEWTGPYFADLNQCSEANAKKYVRVNGDVFFGGTLLAGSIRNSQQTSSLANNASVSTGTF
GSNGGMIVANASWTYSYTSEQTYAATTQGRNAFDADLDSFGRQYLQASGGDSWTGSKSIG
LDGNGVVLNLRRNGALVASQAGGTGLLSLEGVRPMPGDSGGRITWTYSYAASLTYTDPEH
NTASRTYSADITRNLGSGANVTQRVGVSTVE