Protein Info for GFF2584 in Variovorax sp. SCN45

Annotation: Sulfate permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 559 transmembrane" amino acids 30 to 53 (24 residues), see Phobius details amino acids 62 to 93 (32 residues), see Phobius details amino acids 99 to 120 (22 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 178 to 196 (19 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 280 to 299 (20 residues), see Phobius details amino acids 352 to 371 (20 residues), see Phobius details amino acids 377 to 394 (18 residues), see Phobius details amino acids 414 to 443 (30 residues), see Phobius details amino acids 463 to 475 (13 residues), see Phobius details amino acids 494 to 512 (19 residues), see Phobius details PF00916: Sulfate_transp" amino acids 26 to 400 (375 residues), 278.3 bits, see alignment E=1.3e-86 PF16983: MFS_MOT1" amino acids 300 to 393 (94 residues), 33.1 bits, see alignment E=9.4e-12 PF01740: STAS" amino acids 458 to 548 (91 residues), 48.7 bits, see alignment E=8.7e-17

Best Hits

KEGG orthology group: K03321, sulfate permease, SulP family (inferred from 81% identity to vap:Vapar_4088)

Predicted SEED Role

"Sulfate permease" in subsystem Cysteine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (559 amino acids)

>GFF2584 Sulfate permease (Variovorax sp. SCN45)
MHFPLNLARFRPRLMDALADYDRARFFRDLGAGAMVGIVALPLAMAFAVASGIRPEAGIW
TAVTAGFLISLLGGSAVQISGPAAAFVVIVYGIVERYGVANLLICTACAGVLLFMAGLFG
LGRLLRLVPMSIVVGFTNGIAVLILLSQLKELLGLAVAKMPADPFLQLHAMALQLGSFNP
HAFALGVACVAGLLLWPRLLRAESKIGAAVLRAGGRVARSRGVQMSARVPGPVVALVTLT
LLSWGLELPVETIDTRFGGIPEGAPAFALPDFSWETVKQLVMPTLTIALLGAIESLLCAR
VSDQISGQSPHDPDQELMAQGVANVVTPFFGGMPATGAIARTVTNIRSGGTSPVAGMVHA
LTLLLVVLLAAPLARHVPLAVLAGILVFVALKMGEWREFAPTRLRQLDRHYRLLMLGTFF
LTVVFDLTVAMQAGIVLACVLFMRRMSGLFSVELVMLQPPVLTYRIYGALFFGAAAKLDE
AVNAAERAPRGMTVVLDAMHLIYLDATGIAALRRLHRAVLARGGLLRIESLQPQPREAIE
RSGFAEELVAGRPADAPGA