Protein Info for GFF2578 in Sphingobium sp. HT1-2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 933 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF12969: DUF3857" amino acids 72 to 224 (153 residues), 51.9 bits, see alignment E=9.8e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (933 amino acids)

>GFF2578 hypothetical protein (Sphingobium sp. HT1-2)
MRHFGWLAASAAMTVVAPAFAGEVPLYQPAPGWIDKAAMPKLAADGDPPSMMILDSQQRV
EKGQLWNYADIATRAGSAEALTQLSSLTLPWAPDKGDLIIHELSILRGDQVIDALASGKK
FTVLRREQGLEALQISGILTATMAVEGVQVGDVVRLRYSTTSKDDALGGHVQNVSALPAA
PLRLGYGRVRLLWDDADAPRWKLLASGVDAKPVKKGGLTEMSFAVPLAKQPEMPADAPTR
FTHPPLFELSTFASWADVSKTMGPLYATDGLIADGSPLAGELAKLKALPGSPKEKAAAAL
QLVQDHVRYLMVGMNGGNYVPQKPAETWTLRYGDCKAKTLLLLSLLRGLGIEAEPVLASS
TLGDSVPERLPTAAAFDHVLVRAVIDGQSYWLDGTGLGSRLEDIGDTPRFGSVLPVRTAG
AELMPIQTHANARPTIDVSVEADESGHEKLPTVFDAKAVLRGQIATMISTGLGQMDAKRR
DEMVQGFFSEQVGTAQYSQVGVTTDAASATVTFTAHGVTSSPWKLSDRRYRRDASKLIDE
ISFAPDRARPAWLAIPVATSAPIGIRYHLRLRLPQGGKGYAIEGEQGLSKTVAGYDLRRT
VQLKDGVLDVEERTDATGVEIAADRLPDERDALATVQAMSPHVIGPAKPTYLWDYSPATI
AAWPQSKAVEATFAKAIAADAEDATGYSSRSNFRWGIGDYKNALVDLDKAIGIKPDVDLY
LQRAYRRFQTGDVTGALADGRMARQLDPASGAAVGTVATYLAESGKLDDALGMVDAKIAI
GGEARDGYRSFKATLLGTYGDPAKAIEIIDAQLAEKPGMTGLFNERCWVKGSRNVELDSA
MQDCTKAVELSSGSMAALDSRAMLWFRMGRFDDALRDLDVVVAQEPGKEPSRYMRGIVLH
RLGRASEGDAEIAVARRIDPRIDAVYARYGIKP