Protein Info for GFF2575 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Branched-chain amino acid transport protein AzlC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 46 to 69 (24 residues), see Phobius details amino acids 74 to 95 (22 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 194 to 212 (19 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details PF03591: AzlC" amino acids 23 to 168 (146 residues), 121.2 bits, see alignment E=2.3e-39

Best Hits

KEGG orthology group: None (inferred from 72% identity to pol:Bpro_4637)

Predicted SEED Role

"Branched-chain amino acid transport protein AzlC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>GFF2575 Branched-chain amino acid transport protein AzlC (Hydrogenophaga sp. GW460-11-11-14-LB1)
MFHRREYRNRPEYWDGVRDQVSVAMGIGAWGLMTGVAMVQSGLSALEAVLMTLIVYAGSA
QLAAVPMIAAGAPLWVILAAAFCVNLRFVVFSAHLRPYLMHLPRWERLIKGYITGDLSYV
FFARRFPHPGANAEELAQQQAYLMGNCAVNYVAWMGASLIGIALANAIPVAWGLGFAGIL
ALLGVLCSLASSKLRFVSAGVAGAAAVAAWALPLKLNILVAIASAVAICLVLEKFRPAAQ
GPGAHHA