Protein Info for GFF2574 in Xanthobacter sp. DMC5

Annotation: putative protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 835 PF04174: CP_ATPgrasp_1" amino acids 96 to 392 (297 residues), 289.4 bits, see alignment E=4.9e-90 PF14403: CP_ATPgrasp_2" amino acids 96 to 474 (379 residues), 456.1 bits, see alignment E=1.3e-140 PF04168: Alpha-E" amino acids 523 to 821 (299 residues), 231.9 bits, see alignment E=2.1e-72

Best Hits

KEGG orthology group: None (inferred from 92% identity to xau:Xaut_0516)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (835 amino acids)

>GFF2574 putative protein (Xanthobacter sp. DMC5)
VSGAEQRSEVFERAAAESLIGGYRTLPATRDEMMDADGQPRRHWQPFLAALAELGPEELR
RRFSAADRYLRDSGVFYRVYDDAGGGERPWSLSHMPLIIGNSDWEALSAGLIERAELLEE
VLQDLYGDAHLVADGDLPAAAVAGSPEFLRPLVGVRPEGGRYLRVYAADVGRGPDGRWWV
LADRTQAPSGAGYALENRLASTRALPDVSRNLNMKRVAAFFQALRTSLMKLDRTGEGRIG
LLTPGPLNETYFEHALLARYLGFLLVEGEDLTVRGDTLHVRTVAGLRRIDVLLRRLDSDF
ADPLELNARSRLGVPGLVQSVRMGGVALANALGSGIVEAPALLAFLPRIATRLTGRPLSL
PHVATWWCGQPAERAQVMEHLDELVISSAFGRALPGLPDGGSVLGADLTQADRRRLSTLL
ARRGADVVGQDIARLSTTPVWTGEKLTPRPFMLRVFLTATEKGWSVMPGGFCRISSAADA
RAVSMQKGDRSADVWVLADGEVADTTLLPSPDNVKVRRSSGTLPSRAADNLFWLGRYVER
AEATLRLSRVLVGRLAESGDTGTSPLVSRLLGLLGAWGAMPRDLARATPTRYAVAVLTRR
DVPGALPQLVQAARSAASVIRDRFSPDAWRALVDLETCVSQPVPAAPSEADVAERADAAL
RIIAAFSGLASENMNRLTGWRFLEIGRRTERAIGTLRFARTFGEIGAPQGSLDALLQVAD
SLITYRTRYVMMEARGPVLDLVLLDPDNPRSVAFQVHRMANHLKVLPGRDQDAPPPLWER
IVARMQAELAASTAESFEPQWFDAMEKMLMQLSDEVSSHYFLQGHSPEMTLTFGM