Protein Info for GFF2562 in Variovorax sp. SCN45

Annotation: UPF0391 membrane protein RGE_28580

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 54 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details amino acids 25 to 25 (1 residues), see Phobius details transmembrane" amino acids 21 to 24 (4 residues), see Phobius details amino acids 33 to 51 (19 residues), see Phobius details PF07043: DUF1328" amino acids 6 to 43 (38 residues), 48.6 bits, see alignment E=4.1e-17

Best Hits

Swiss-Prot: 80% identical to Y1875_RHOFT: UPF0391 membrane protein Rfer_1875 (Rfer_1875) from Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118)

KEGG orthology group: None (inferred from 93% identity to vap:Vapar_4110)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (54 amino acids)

>GFF2562 UPF0391 membrane protein RGE_28580 (Variovorax sp. SCN45)
MLHYAVVFLVIALIAALFGFGGIAASAVGIAKILFVIFAILAIASFLSGLLRRK