Protein Info for GFF2559 in Xanthobacter sp. DMC5

Annotation: C4-dicarboxylate TRAP transporter large permease protein DctM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 426 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 77 to 92 (16 residues), see Phobius details amino acids 95 to 95 (1 residues), see Phobius details amino acids 98 to 122 (25 residues), see Phobius details amino acids 134 to 153 (20 residues), see Phobius details amino acids 155 to 156 (2 residues), see Phobius details amino acids 170 to 194 (25 residues), see Phobius details amino acids 206 to 229 (24 residues), see Phobius details amino acids 235 to 257 (23 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 314 to 348 (35 residues), see Phobius details amino acids 351 to 352 (2 residues), see Phobius details amino acids 356 to 385 (30 residues), see Phobius details amino acids 397 to 421 (25 residues), see Phobius details PF06808: DctM" amino acids 7 to 416 (410 residues), 390.1 bits, see alignment E=6.1e-121 TIGR00786: TRAP transporter, DctM subunit" amino acids 17 to 422 (406 residues), 451.6 bits, see alignment E=1.1e-139

Best Hits

KEGG orthology group: None (inferred from 86% identity to azc:AZC_3336)

Predicted SEED Role

"TRAP-type C4-dicarboxylate transport system, large permease component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (426 amino acids)

>GFF2559 C4-dicarboxylate TRAP transporter large permease protein DctM (Xanthobacter sp. DMC5)
MAITILFGVFSLLLLVGTPVAFCLGLASLATVLYLDLPPVVVFQQLNSGMNAFSMLAIPF
FIFAGDLMMRGGIADRLIGMAASLVGHLRGGLGQVNVVASTLFGGISGSAVADASAIGGI
MIPQMARHGYAKDYAVNVTVNSAIIALMIPPSHNMIIYSLSAGGTISIADLFTAGIMPGL
LLAAAMMITAYVVARNRGYPAGTFPGWHAVLRSVVAAIPGIMLIGIIFGGVRSGIFTATE
SSCIAVIYALLVTTLVYREMHWADFVEATLGAVRTTAMVLLVIGTAASFGWLMAFLQVPK
ATIEMMQAISSNPYVILLLINIILLILGTFMDMAPMIIICTPIFLPLVKAFGIDPVHFGV
ILILNAGIGLNTPPVGSVLFVGCAVGKITIGEAMKTIWPFFGASIAVLMIVTYVPAVSLW
LPAAFR