Protein Info for GFF2552 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 167 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 54 to 79 (26 residues), see Phobius details amino acids 110 to 127 (18 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details TIGR00645: TIGR00645 family protein" amino acids 3 to 165 (163 residues), 180 bits, see alignment E=2.3e-57 PF03350: UPF0114" amino acids 10 to 126 (117 residues), 130.8 bits, see alignment E=1.5e-42

Best Hits

Swiss-Prot: 48% identical to Y3357_KLEP7: UPF0114 protein KPN78578_33570 (KPN78578_33570) from Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)

KEGG orthology group: None (inferred from 87% identity to xau:Xaut_0497)

Predicted SEED Role

"Uncharacterized protein family UPF0114"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (167 amino acids)

>GFF2552 hypothetical protein (Xanthobacter sp. DMC5)
MIERVIEGILFRSRWILAPFYVGLVVGMLVLLFKFGHELLHFVLHAVAATESDIILGILA
LVDLTLTCNLVVIVIFSGYENFVSKIDPNGHPDWPDWMTRVDFTGLKQKLLASIVAISAI
QLLKAFMNLDKGTMSENTLMWLVIIHVVFVGSSLVLAWSDSLSNNKH