Protein Info for GFF2551 in Xanthobacter sp. DMC5

Annotation: Inner membrane ABC transporter permease protein YcjP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 26 to 48 (23 residues), see Phobius details amino acids 90 to 114 (25 residues), see Phobius details amino acids 126 to 153 (28 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 202 to 225 (24 residues), see Phobius details amino acids 263 to 286 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 108 to 290 (183 residues), 64.6 bits, see alignment E=5.3e-22

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 93% identity to azc:AZC_4211)

Predicted SEED Role

"Maltose/maltodextrin ABC transporter, permease protein MalG" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (296 amino acids)

>GFF2551 Inner membrane ABC transporter permease protein YcjP (Xanthobacter sp. DMC5)
MAQPQPTPMTDNSTGMSYLDSLPRRVVTVFLPLLVFVFVLLFPFYWMAITAVKPNFQLTD
YNNYSPLWVVQPTLDHIKYLLFETSYPHWLWNTVYISVAATVISLVTSVFAAYAIERLRF
NGSRWVGLGIFLAYLVPPSILFIPLAIMVFGLGIYDTKLALILTYPTFLVPFSTWLLMGY
FRSIPFELEECALVDGASRWQILIKVLLPLSVPGLISAGIFSFTLSWNEFIYALTFIQSS
ENKTVPVGVLTELVRSDVYEWGSLMAGALIGSLPVVILYSFFVDYYVSSMTGAVKE