Protein Info for GFF2539 in Variovorax sp. SCN45

Annotation: FAD/FMN-containing dehydrogenases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1292 PF12447: DUF3683" amino acids 19 to 136 (118 residues), 160 bits, see alignment E=6.7e-51 PF01565: FAD_binding_4" amino acids 186 to 331 (146 residues), 78.4 bits, see alignment E=1.4e-25 PF02913: FAD-oxidase_C" amino acids 443 to 566 (124 residues), 27.1 bits, see alignment E=1e-09 amino acids 674 to 773 (100 residues), 57.8 bits, see alignment 4.2e-19 PF13183: Fer4_8" amino acids 818 to 897 (80 residues), 33.1 bits, see alignment 2e-11 PF02754: CCG" amino acids 1028 to 1117 (90 residues), 28 bits, see alignment 5.7e-10 amino acids 1153 to 1241 (89 residues), 19.5 bits, see alignment 2.5e-07 PF11880: DUF3400" amino acids 1245 to 1292 (48 residues), 74.2 bits, see alignment (E = 1.5e-24)

Best Hits

KEGG orthology group: None (inferred from 83% identity to aaa:Acav_3566)

Predicted SEED Role

"FAD/FMN-containing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1292 amino acids)

>GFF2539 FAD/FMN-containing dehydrogenases (Variovorax sp. SCN45)
MNAPTALNTLLSQAAEPVRLREIPYNYTSFSDREIVIRLLGERGWDLLQTLRAERRTGRS
ARMLYEVLGDIWVVQRNPYLVDDLLDNPRRRGQLVDALRHRLAEVQKRRTPDSDLPRDQL
VGELTALVGDAVAAFDTKFRDVAALRRKATRVLRRLTAKDNIKFDGLSRVSHVTDATDWR
VEYPFVVLCPDTEAEMALLVKGCIELGLTIIPRGGGTGYTGGAIPLTWKSVVINTEKLEA
MTEVEHMPLPGLADPVPTIWTEAGVVTQRVADAAERSGFVFAVDPTSAEASCVGGNVAMN
AGGKKAVLWGTALDNLASWRMVTPQAEWLEVTRIGHNLGKIHDAESAVFELQYYAADGKT
KLRTERLDIPGRTFRKEGLGKDVTDKFLSGLPGIQKEGCDGLITSCRWVVHRMPAHTRTV
CLEFFGNAKDAVPSIVEIKDFMFAEQKRSGVLLAGLEHLDDRYLKAVGYATKSKKHGGLP
KMVLFGDIAGDDADAVARVTSEVVRIANSRSGEGFIAISPEARKKFWLDRKRTAAISKHT
NAFKINEDVVIPLPRMAEYSDGIERINIELSLQNKLALTDELEAFLTRGNLPLGKTDDAH
EIPAAELLEDRVAQAVALVQEVRTLWAGWLRDVDAQFVQLQDHTLRASWKTQLRQPLQEI
FSGAEFAPILAECTAIHKRVLKGRVWVALHMHAGDGNVHTNLPVNSDNYEMLQTAHAAVV
RIMALARSLDGVISGEHGIGITKLEFLSDEELRPFTEYKAKVDPEGRFNKGKLLRAPAGQ
VETLHADLTNAYTPSFGLMGHESLIMQQSDIGAIADSVKDCLRCGKCKPVCATHVPRANL
LYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWEEFEDVADHCTVCHKCLTPCPVKIDFG
DVSMNMRNLLRKMGQKSFRPGNAAAMFFLNATNPQTIKTMRAGMVGVGFKAQRLANDLLR
GLAKKQTSAPPASLGVAPIKEQVVHFINKKMPGGLPKQTARALLDIEDADYVPIIRNPKA
TTPETEAVFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGSGQFDKA
EKMITDNRVLFHRVANTLNYLDIKTVVVSCGTCYDQLQGYQFDKIFPGCRIIDIHEYLLE
KGITLAEAGGGGYLYHDPCHSPMKQQDPMKTVKALVGDNVLKNDRCCGESGTLGVSRPDI
STQIRFRKESELKKGEAALRDSGKVGEKDNVKILTSCPSCLQGLSRYGNDLNNGLLEADY
IVVEMANKILGADWMPTYVAAANQGGIERVLV