Protein Info for GFF253 in Xanthobacter sp. DMC5

Annotation: 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxonon atrienedioate hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF00561: Abhydrolase_1" amino acids 5 to 98 (94 residues), 35.1 bits, see alignment E=2.4e-12 amino acids 120 to 179 (60 residues), 28.7 bits, see alignment E=2.1e-10 PF12697: Abhydrolase_6" amino acids 5 to 189 (185 residues), 43.9 bits, see alignment E=9.7e-15 PF08386: Abhydrolase_4" amino acids 121 to 196 (76 residues), 31.9 bits, see alignment E=2.5e-11

Best Hits

KEGG orthology group: None (inferred from 50% identity to bgd:bgla_2g27380)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>GFF253 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxonon atrienedioate hydrolase (Xanthobacter sp. DMC5)
MIETLFLPGATGDAAFWRPVADRAEWDGTFFSWPGLGRQPARADVNSIDDLVALVAERMR
EPVAIVAQSMGGYIGLKLALAFPHLVRTLVLCVTSGGVPVADLGGEDWRPDYFGAFPDAA
RWIADPVEDLSDRLSTVRAPTLLLWGDADPISPVAVGERLARLLPASRLCIVPGAGHDLA
QTHAAAAADEIRRHLIATS