Protein Info for PS417_12825 in Pseudomonas simiae WCS417

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 46 to 63 (18 residues), see Phobius details amino acids 75 to 98 (24 residues), see Phobius details amino acids 104 to 122 (19 residues), see Phobius details amino acids 132 to 156 (25 residues), see Phobius details amino acids 162 to 184 (23 residues), see Phobius details amino acids 206 to 230 (25 residues), see Phobius details amino acids 242 to 261 (20 residues), see Phobius details amino acids 273 to 307 (35 residues), see Phobius details amino acids 338 to 357 (20 residues), see Phobius details amino acids 368 to 391 (24 residues), see Phobius details PF07690: MFS_1" amino acids 12 to 346 (335 residues), 209.4 bits, see alignment E=7.3e-66 PF00083: Sugar_tr" amino acids 43 to 178 (136 residues), 27.7 bits, see alignment E=1.3e-10

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfs:PFLU2767)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UKQ0 at UniProt or InterPro

Protein Sequence (404 amino acids)

>PS417_12825 MFS transporter (Pseudomonas simiae WCS417)
MQSTSRGSLVSLSLSMLLASLGTSIANVALPSLTRAFDASFHAVQWVVLAYLLAITAVIV
SAGRLGDRFGRRRSLLAGLLLFAVACGLCGMASSLAWLIAARVLQGLGAAVMMAMALGMV
GDTVTKARTGRVMGLLGTMSAVGTAMGPSVGGVLLSVWGWRAIFLVGVPLGLVAVALACC
YLPVDRPHARSSAGSGFWPSLKDASLRTGLVMSALVAAVIMATFVVGPFYLSRGLGLDPE
WMGLVMAVGPCVAAITGVPAGRLTDRLGSPRMTLAGLGMMACGALLLSCAWGLFVYLGAL
VILTTGYSLFQAANNTAVMGDVEGARRGTVSGLLNLSRNLGLIVGAWALGAVFAWASPDV
TRALPQSVAYGLHTTFSVALGLILLASVMAWRRFAAFNGLQNIH