Protein Info for GFF251 in Xanthobacter sp. DMC5

Annotation: Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 16 to 34 (19 residues), see Phobius details amino acids 46 to 69 (24 residues), see Phobius details amino acids 82 to 100 (19 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 150 to 167 (18 residues), see Phobius details amino acids 173 to 192 (20 residues), see Phobius details amino acids 204 to 225 (22 residues), see Phobius details amino acids 248 to 266 (19 residues), see Phobius details PF01794: Ferric_reduct" amino acids 50 to 161 (112 residues), 43.5 bits, see alignment E=1.6e-15

Best Hits

KEGG orthology group: None (inferred from 76% identity to xau:Xaut_3512)

Predicted SEED Role

"FIG001196: Membrane protein YedZ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>GFF251 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ (Xanthobacter sp. DMC5)
MPLFHERSGRFSPEKTLFLVSSILPAVWLVGLAANGQLGARPWTEAIHFTGLWAIRFLAV
TLAVTPLRRLFNMPKLYFGRRIFGLAALGYAALHLTLYIIDQGFGRALSEIVLRIYLTIG
AVAVALLVALGATSTDGAIRRLGATRWNRLHMAVYAIAVLGTVHFFMQSKLDVTEPVLMA
GIFLLLFAFRVAGRGGKNVTPLRMAGLSVAGAALTAGVEMLWYVLATRVDPWLVLDANFT
FDLGPRPAVWVLVIGLAVAVLAAINPPAPRPAGRRAAMTGNTEGAGA