Protein Info for GFF2495 in Sphingobium sp. HT1-2

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details amino acids 360 to 381 (22 residues), see Phobius details amino acids 386 to 411 (26 residues), see Phobius details amino acids 431 to 453 (23 residues), see Phobius details amino acids 463 to 485 (23 residues), see Phobius details amino acids 525 to 543 (19 residues), see Phobius details amino acids 804 to 823 (20 residues), see Phobius details amino acids 851 to 869 (19 residues), see Phobius details amino acids 879 to 899 (21 residues), see Phobius details amino acids 906 to 929 (24 residues), see Phobius details amino acids 951 to 970 (20 residues), see Phobius details amino acids 982 to 1005 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1007 (1004 residues), 976.1 bits, see alignment E=2.9e-297 PF03176: MMPL" amino acids 272 to 488 (217 residues), 28.5 bits, see alignment E=1.2e-10 PF02355: SecD_SecF_C" amino acids 853 to 1000 (148 residues), 21.8 bits, see alignment E=1.7e-08

Best Hits

KEGG orthology group: None (inferred from 84% identity to sch:Sphch_1378)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1034 amino acids)

>GFF2495 RND efflux system, inner membrane transporter (Sphingobium sp. HT1-2)
MQLSDLSVRRPVFSAVVAVLMCIVGLVGYFSLSVREYPDTDPPIVSVETTYTGAAASVVE
TRITQQIEDAVAGVQGIQTITSTSQDGTSNINIEFDPSRDIDSAANDVRDRVGSVTQDLP
EDALAPEIRKVDSDARSILFLAFSRPGWSPIQISDYLDRNIADRFAAIDGVARVTIGGEA
RPSTRIWFNAEKLAAFGLTPADVEAALRTQNVELPAGRFESKDQNQTLRVERPFATPDQF
AQLVVGRGEDGYQVKLGDVARIEEGAENPYSSFRSNQGTAIGIGIIRQSGANTLEVAQKA
KALIKELEPTLPKGMKVAIGTDESLFIERAIDNVYDTLIEAALLVILVIFLFLGSVRATI
VPAVTVPICLLATCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENVYHRVEQGDDP
LVAAYLGTRQVGFAIISTTLVVCAVFVPVMFLAGQTGLLFRELAIAMIAAIGFSGFISLS
LAPMLCSKLLKNAERGRLARWVDDRFQRIEHGYGRWLDWTLKKPLMPLLGVAIFLGVAFF
LFTRLPAELAPAEDTGVVEANVNAPEGTGFDRMMAYMQKIENDLAFLRKDGTLQNLVIRT
PGGFGTTDDYNNGNVIAFLRPWEDRTITTAEVATIINKVIADQPGVRGNAAPRSGLGRGR
GLPVNIVLAGSTYEGLVAARDRIMLAAASYPGLINLDSDYKETKPQMRIETDLQRAGDLG
VSVNDVSQALQSLLGSRRVTTYVDRGEEYRVLVQAERDGRQTLADLERIQVRSRRGVLVP
LSAVVTVREVAGPRQLNRYNKLRAITLTAALAPGTSLGQGLAFLEDQARQSPEVLAIGYR
GESQSLRETGGSIWIVFGLTILIVYLLLAAQFESFIHPGVIIATVPLAVAGGALGLAITG
GSINLYSQIGIVMLVGLAAKNGILIVEFANQLRDEGMEIAEAIREAAKRRLRPILMTSIA
TVIGAVPLVLRGGAGAAARHSIGVVIVFGVSLATLITLFLIPIFYSRVAKRTVSPQTVGR
KLDSALKDSPEPAE