Protein Info for GFF2494 in Hydrogenophaga sp. GW460-11-11-14-LB1

Annotation: Proteins containing SET domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 PF00856: SET" amino acids 38 to 139 (102 residues), 88 bits, see alignment E=2.7e-29

Best Hits

KEGG orthology group: K07117, (no description) (inferred from 74% identity to pna:Pnap_3964)

Predicted SEED Role

"Proteins containing SET domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (180 amino acids)

>GFF2494 Proteins containing SET domain (Hydrogenophaga sp. GW460-11-11-14-LB1)
LAVTKSPRQTQPRPSSAPAKAAASNSRRIQTRRSGVHGKGVYAVVDLAEGETLIEYVGEI
ITWDEALRRHPHDPSDPNHTFYFHIDEDHVIDAKVGGNSARWINHSCKPNCEADVEDGRV
FIRARRPIEAGEELFYDYGLVIDEPYTPKLKAEYPCWCGAKKCRGTLLAPKRAGRASKLG