Protein Info for GFF2480 in Xanthobacter sp. DMC5

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 37 to 60 (24 residues), see Phobius details amino acids 66 to 82 (17 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 127 to 145 (19 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 199 to 215 (17 residues), see Phobius details amino acids 222 to 238 (17 residues), see Phobius details amino acids 244 to 261 (18 residues), see Phobius details amino acids 268 to 289 (22 residues), see Phobius details amino acids 353 to 376 (24 residues), see Phobius details amino acids 396 to 424 (29 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 50% identity to azc:AZC_4420)

Predicted SEED Role

"FIG01011124: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>GFF2480 hypothetical protein (Xanthobacter sp. DMC5)
MTAQNGLPARRGALRRVTIPAMAAKVRRARLNLGERFSPGLTMAVLLFILPVFAECFHYY
SELLPLYALSKAWPILTLPLTIRGLAKLDLPCKYIYVIFLAYGLGVTPLVSIMQLGNDFF
GSITTTVKIWPITYYFGLSVMLLWISPVPDRVRRACVVLGIATYVLMLMLWILIPDAWYT
DNSSQGKLLLTDDERGNRIYMPMFFGILLVFYLTRSFMKKPHVVKAIGIVLAFALMLWIY
KQRAAIGCSILICGYAAFSSLSPRWKRAALAGVLVLLPFAVIAAINLGGNAAQDLGGSLS
VRQTSLAQAFGFLGDQPLRWLFGVGATTRFGTVTLADIFQNADFYVSDLGWAGVAFEYGL
VGSLLIMTLFVTGFLAARTAAKRTGHCLDLALSDYILYMLATSAVYPLTFTPGELCVAMG
LAIYMSRWKPPGEALAGGGGRRVAFRTHVVEIGGNRRRRQVAIGKLNG