Protein Info for PS417_12630 in Pseudomonas simiae WCS417

Annotation: monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 236 to 254 (19 residues), see Phobius details PF02771: Acyl-CoA_dh_N" amino acids 29 to 96 (68 residues), 26.1 bits, see alignment E=9.8e-10 PF08028: Acyl-CoA_dh_2" amino acids 245 to 380 (136 residues), 42.7 bits, see alignment E=6.9e-15

Best Hits

KEGG orthology group: None (inferred from 97% identity to pfs:PFLU2729)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TXA8 at UniProt or InterPro

Protein Sequence (412 amino acids)

>PS417_12630 monooxygenase (Pseudomonas simiae WCS417)
MTEQHVINPLSTGVDYPTLAARFRPIFQRIAEGALEREQRRTLPHEPIQWLKAAGFGAVR
VPVEYGGGGASLPQLFELLIELAEADSNVPQALRGHFAFAEDRLNAPPSAGRDLWFKRFV
EGDIVGCAWTEIGNVAIGDVVTQVSPDGDHWKLNGEKFYSTGSIFADWIDVYAQRSDTGA
DVIAATRARQPGVVHSDDWDGFGQRTTGSGTSRFTDAVVEADNVIDFATRFKYQTAFYQL
VLLASLAGIGRAALRDVAHQVRSRKRIYSHGNAAHVSQDAQVQQVVGEVAALVYAAEASA
LKATLPAQRAYLARFGRDDIVEREANVAAEIESATAQVVVSGLIQRATSELFNALGASDV
RQGKALDRHWRNARTVSSHNPVIYKARIVGDWVVNGVEPPFVWQIGNGPGRG