Protein Info for GFF2451 in Variovorax sp. SCN45

Annotation: Cytosine/purine/uracil/thiamine/allantoin permease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 501 transmembrane" amino acids 32 to 55 (24 residues), see Phobius details amino acids 61 to 86 (26 residues), see Phobius details amino acids 110 to 129 (20 residues), see Phobius details amino acids 151 to 174 (24 residues), see Phobius details amino acids 186 to 203 (18 residues), see Phobius details amino acids 228 to 249 (22 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 310 to 333 (24 residues), see Phobius details amino acids 353 to 370 (18 residues), see Phobius details amino acids 376 to 401 (26 residues), see Phobius details amino acids 423 to 443 (21 residues), see Phobius details amino acids 463 to 482 (20 residues), see Phobius details TIGR00800: NCS1 nucleoside transporter family" amino acids 16 to 445 (430 residues), 396.7 bits, see alignment E=6.2e-123 PF02133: Transp_cyt_pur" amino acids 23 to 471 (449 residues), 430 bits, see alignment E=5.3e-133

Best Hits

KEGG orthology group: None (inferred from 80% identity to aaa:Acav_0941)

Predicted SEED Role

"Cytosine/purine/uracil/thiamine/allantoin permease family protein" in subsystem Purine Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (501 amino acids)

>GFF2451 Cytosine/purine/uracil/thiamine/allantoin permease family protein (Variovorax sp. SCN45)
MTTPSHGGAPAANLWNEDLAPTTLAQRTWRWYHFAALWVGMVMCIPAYTLAASLIEGGMS
WSQAVLTVFLGNAIVLVPMLLIGHAGAKYGIPYAVMARASFGTRGARLPALLRAIVACGW
YGIQTWFGGEMIYTLVGVLMGQPLGGDKLPILGINGAQLVCFLIFWAIQLYFVVHGIESI
RRLETYTAPLKIIVCIALLYWAVQRAGGLGPIFEQPSQFEPGGKKAGLFWAVFWPSLTAM
VGFWATLALNIPDFTRFSRSQRDQVVGQVIGLPAPMGLLAMMAVMVTSATVVIYGKALWD
PVDLASRMTGAAVLIALIILLIDTVSVNLAANLVGPAYDFSALNPEKISYRKGGYITAGI
AIVMMPWKVLETTQGYIFTWLIGYSALLGPVAGILIADYYLVRRKELDVDALYRGTGQYA
YGNGWNMAAIVAFVVGVLPNIPGFLNAAFPSAVPSMPEFFKTIYTYAWFVGVVLSAVVYL
GLMKARAPQLQGVAAPLKNPS