Protein Info for PS417_12480 in Pseudomonas simiae WCS417

Annotation: peptidase C39

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 226 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF03412: Peptidase_C39" amino acids 46 to 178 (133 residues), 66.2 bits, see alignment E=1.4e-22

Best Hits

KEGG orthology group: K06992, (no description) (inferred from 99% identity to pfs:PFLU2698)

Predicted SEED Role

"Fap protein with C39 domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UBD5 at UniProt or InterPro

Protein Sequence (226 amino acids)

>PS417_12480 peptidase C39 (Pseudomonas simiae WCS417)
MRLATLTLLMLLTGPTWAGTMAISAMPGGAVIYKKVESIRERRFANLVEQKTDFSCGAAA
LATILRQGYWLDVDEDHVIKGMLVNADQDLVRTQGFSMLDMKRYLESIGMRARGYKIGPE
TLVTVKIPVVVLLEIRGYKHFVVLQRADKDWVYIGDPVLGHKRYSHDDFVKGWNGIVFAI
LGEGYDKANALLDPPTPLTAKNQMNEFRPVGDAELMDFGFIQSDFF