Protein Info for PS417_01245 in Pseudomonas simiae WCS417

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07719: TPR_2" amino acids 273 to 303 (31 residues), 26.2 bits, see alignment (E = 2.9e-09) PF13181: TPR_8" amino acids 275 to 303 (29 residues), 16.6 bits, see alignment (E = 3.5e-06) PF13414: TPR_11" amino acids 279 to 320 (42 residues), 29.5 bits, see alignment 2.4e-10 PF13176: TPR_7" amino acids 348 to 372 (25 residues), 16.6 bits, see alignment (E = 3.4e-06)

Best Hits

KEGG orthology group: None (inferred from 94% identity to pfs:PFLU0272)

Predicted SEED Role

"TPR domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UEE6 at UniProt or InterPro

Protein Sequence (391 amino acids)

>PS417_01245 hypothetical protein (Pseudomonas simiae WCS417)
MGLLRVASAMSLCAVAFSVQAEQLPIEVLSAVVKDQKIADAEVLLQRNGAQNVVGRTNGQ
GQVTLNSEAADDASSLLIIKKPGYSNLVVKCPCKGMTYAISPVMENLDGLRVVLTWGKTP
SDLDSHMIFPGNNIYFENQKGTDAELDVDDTDSYGPETITLQKKHYGESYVYAVHDYSNG
GNPGSRQLSDSEAKVFVYMGQSLVRTYYVPKNRSGNLWTVFRMTGSGDFQDINTFSGVTV
NAANVLNEVKPLLDDSVAVTAVTVSSSVQTDAKRLNLQGEAAYQAGKLDEAIDLFRQAIE
LDNGFGKAYGNLGLAYQKAGNTAESIWANRKAIALATGANAATVRAGAYYNIARIYEAAG
QFPDALRHYQLAKEQKANPVYDTAIERVQNR