Protein Info for GFF2429 in Variovorax sp. SCN45

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 transmembrane" amino acids 33 to 58 (26 residues), see Phobius details amino acids 66 to 89 (24 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 158 to 182 (25 residues), see Phobius details amino acids 195 to 216 (22 residues), see Phobius details amino acids 222 to 240 (19 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details PF01925: TauE" amino acids 41 to 266 (226 residues), 98 bits, see alignment E=3.7e-32

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 67% identity to spe:Spro_0300)

Predicted SEED Role

"putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>GFF2429 putative membrane protein (Variovorax sp. SCN45)
MDARPIRYWRAAAEAPRFAGMDSLFGALPITPLQFAIVCTGVVVAYVIFGIAGFGTALVA
GPVLANFIPVASVVPLLALLDFFAAIVNVSRDARSADTGELRRLVPVMALGSLVGAALLL
LGRPQVLLLALGIFAVAYALYSLSGLKPVSQLSPRASVPFGFVGGIFSAMFGSGGFIYAI
YLAGRIEQKERIRVTQSTLIGLSTLTRAVLFLLAGVYAQTAILWLAVLLFPAMLVGTALG
RRITLRLSREQFLRVVAVAVLCSGAFLIYRYAGA