Protein Info for GFF2428 in Xanthobacter sp. DMC5

Annotation: 30S ribosomal protein S1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 TIGR00717: ribosomal protein bS1" amino acids 9 to 526 (518 residues), 632.9 bits, see alignment E=2e-194 PF00575: S1" amino acids 25 to 92 (68 residues), 38.7 bits, see alignment E=2.1e-13 amino acids 109 to 177 (69 residues), 44.4 bits, see alignment E=3.5e-15 amino acids 195 to 266 (72 residues), 76.7 bits, see alignment E=2.9e-25 amino acids 280 to 353 (74 residues), 75 bits, see alignment E=1e-24 amino acids 367 to 440 (74 residues), 71.7 bits, see alignment E=1e-23 amino acids 453 to 526 (74 residues), 50.5 bits, see alignment E=4.3e-17

Best Hits

Swiss-Prot: 85% identical to RS1_RHOPA: 30S ribosomal protein S1 (rpsA) from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)

KEGG orthology group: K02945, small subunit ribosomal protein S1 (inferred from 96% identity to xau:Xaut_2229)

MetaCyc: 50% identical to 30S ribosomal subunit protein S1 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S1p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>GFF2428 30S ribosomal protein S1 (Xanthobacter sp. DMC5)
MSAVETTREDFAALLDESFGRADTNEGSVVKGIVVAIEKDLAIIDIGLKTEGRVALREFA
GPGRENAIKVGDEVEVYLERVENAMGEAVLSRDKARREESWVKLEKAFTANEKVFGVIFN
QVKGGFTVDLDGAVAFLPRSQVDIRPIRDVGPLMHNQQPFQILKMDRRRGNIVVSRRTVL
EETRAEQRHELVQNLEEGQAIDGVVKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEV
LNIGQTVKVKIIKINHETHRISLGMKQLLGDPWEGIEAKYPVEARFKGRVTNITDYGAFV
ELEPGIEGLIHVSEMSWTKKNVHPGKIVSTSQEVEVQVLEVDSAKRRISLGLKQTLQNPW
EAFAEKYAPGAVVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLDWNRPGEQVIDEYRKGDM
VKAVVLDVDVEKERISLGIKQLAGDPFADAGEVKKGAVVTCEVTDVKDGGIEVKLTGTDL
SAFIKRSELARDRNDQRPERFSVGDKLDARVTLFDRKARKVQVSIKAMEIAEEREAVAQF
GSQDSGASLGDILGAALKQRAADAADEADKED