Protein Info for PS417_12335 in Pseudomonas simiae WCS417

Annotation: cobalt transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 78 to 98 (21 residues), see Phobius details amino acids 107 to 125 (19 residues), see Phobius details amino acids 143 to 161 (19 residues), see Phobius details amino acids 166 to 183 (18 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details TIGR02458: cobalt transporter subunit CbtA (proposed)" amino acids 1 to 226 (226 residues), 277 bits, see alignment E=5.8e-87 PF09490: CbtA" amino acids 3 to 224 (222 residues), 179.1 bits, see alignment E=6.9e-57

Best Hits

KEGG orthology group: None (inferred from 98% identity to pfs:PFLU2667)

Predicted SEED Role

"Predicted cobalt transporter CbtA" in subsystem Coenzyme B12 biosynthesis or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7UH80 at UniProt or InterPro

Protein Sequence (234 amino acids)

>PS417_12335 cobalt transporter (Pseudomonas simiae WCS417)
MIKRIAQTAGFTGLLAALLLTLLQSFWVAPLILQAETFEKAPAATEVAHEHTEGAAAHTH
DAEAWEPEDGWQRVLSTTGGNLVVAVGFALMLAGLYTLRAPTRTAQGLLWGLAGYATFVL
APTMGLPPELPGTAAADLALRQTWWIGTAASTAAGIALIVFGRNWLLKVLGVAILAVPHV
IGAPQPEVHSMLAPQALEAQFKIASQLTNVAFWLALGLISAWLFRRNRDDQYSA