Protein Info for PS417_12175 in Pseudomonas simiae WCS417

Annotation: peptide ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 353 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 123 to 143 (21 residues), see Phobius details amino acids 155 to 182 (28 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 269 to 296 (28 residues), see Phobius details amino acids 316 to 338 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 139 to 346 (208 residues), 117.1 bits, see alignment E=8.1e-38

Best Hits

Swiss-Prot: 60% identical to YEJB_ECOLI: Inner membrane ABC transporter permease protein YejB (yejB) from Escherichia coli (strain K12)

KEGG orthology group: K13894, microcin C transport system permease protein (inferred from 99% identity to pfs:PFLU2633)

MetaCyc: 60% identical to putative oligopeptide ABC transporter membrane subunit YejB (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U317 at UniProt or InterPro

Protein Sequence (353 amino acids)

>PS417_12175 peptide ABC transporter permease (Pseudomonas simiae WCS417)
MFAYIVRRLLLIIPTLVIILLVNFVIVQAAPGGPVEQAIAHLQGIGGGAVGGSSGEGISG
GSRASRGLDPKLIADIEKQYGFDKPAPERLWLMLKSYAQLDFGNSFFRGKTVIDLILEKM
PVTLSLGLWATLITYLVSIPLGIRKAVRHGSSFDVWSSTAIVIGYAMPAFLFAMFLIVVF
AGGTSLNWFPVRGLVSENFEELSTVGKIADYFWHLVLPVTSLVIGGFATLTILTKNSFLN
EITRQYVVTARAKGLSERRVLYGHVFRNAMLLVISGIPQAFIAVFFAGSLLIEVIFSLDG
LGRMSYEAAVSRDYPVVFGSLFIFTLFGLLIKLIGDLCYTLVDPRIDFAARNA