Protein Info for PS417_12165 in Pseudomonas simiae WCS417

Annotation: microcin ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 PF00005: ABC_tran" amino acids 20 to 178 (159 residues), 111.9 bits, see alignment E=1.7e-35 amino acids 294 to 444 (151 residues), 120.9 bits, see alignment E=2.9e-38 PF08352: oligo_HPY" amino acids 229 to 258 (30 residues), 24.9 bits, see alignment (E = 9.4e-09) amino acids 495 to 519 (25 residues), 17.8 bits, see alignment (E = 1.6e-06)

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 96% identity to pfs:PFLU2631)

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TX59 at UniProt or InterPro

Protein Sequence (523 amino acids)

>PS417_12165 microcin ABC transporter ATP-binding protein (Pseudomonas simiae WCS417)
MNLIEIRDLSVAFSGQTVVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPEAGTET
TGSIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKGLGG
KAAQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTAL
DVTVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQTLFNA
PQHPYSRLLLDAEPDADALCSDERETVLQVDDLTVQFRLGGGLFRRKTYLRAVDGISLSV
QRGKTLGIVGESGSGKSTLGQAILRLLDSTGSIRFQGEALDPLNNQQMRPWRKQMQVVFQ
DPYGSLSPRMTVEQIISEGLEVHAPCSLADRDAQVIQVLKDVGLDPASRHRYPHEFSGGQ
RQRIAIARALVLKPALMLLDEPTSALDRTVQKQVVALLRELQDKYGLTYLFISHDLAVVR
AMAHDMIVIKDGQVVERGASHAVFDAPQHPYTKELLAAAHIPL