Protein Info for PS417_12115 in Pseudomonas simiae WCS417

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 PF01042: Ribonuc_L-PSP" amino acids 19 to 125 (107 residues), 101.1 bits, see alignment E=2.1e-33

Best Hits

Swiss-Prot: 40% identical to Y3206_SACS2: RutC family protein SSO3206 (SSO3206) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)

KEGG orthology group: None (inferred from 99% identity to pfs:PFLU2621)

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7TX53 at UniProt or InterPro

Protein Sequence (129 amino acids)

>PS417_12115 endoribonuclease L-PSP (Pseudomonas simiae WCS417)
MSITRYGAGSTAGGGQPRPFARAVEADGWLYVSGQVPAVDGEIITGGIIEQTRQTMRNVV
AILEEAGYELKDVVRVGVWLEDPRDFWSFNKVFGEYFTPEHAPARACVQANMMVDCKVEI
DCVAYKKKG