Protein Info for PS417_01195 in Pseudomonas simiae WCS417

Annotation: RNA-binding protein S4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 PF01479: S4" amino acids 11 to 56 (46 residues), 34 bits, see alignment E=9.5e-13

Best Hits

Swiss-Prot: 53% identical to HSLR_HAEIN: Heat shock protein 15 homolog (hslR) from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

KEGG orthology group: K04762, ribosome-associated heat shock protein Hsp15 (inferred from 98% identity to pfs:PFLU0264)

Predicted SEED Role

"Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)" in subsystem Heat shock dnaK gene cluster extended

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1N7U5F9 at UniProt or InterPro

Protein Sequence (135 amino acids)

>PS417_01195 RNA-binding protein S4 (Pseudomonas simiae WCS417)
MAQKQEEEEKVRLDKWLWAARFYKTRALAKAAIESGKVHHRGERCKPGKEPRIGDEFQIR
VGFDEKTVVVQALSIVRRGAPEAQALYTETEASIAKRENAAAMRKAGATGMTTDGKPSKK
QRRDLFKFRGSGNDD