Protein Info for PS417_12025 in Pseudomonas simiae WCS417

Annotation: DSBA oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 511 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details transmembrane" amino acids 47 to 64 (18 residues), see Phobius details amino acids 76 to 98 (23 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 134 to 156 (23 residues), see Phobius details amino acids 164 to 184 (21 residues), see Phobius details amino acids 196 to 215 (20 residues), see Phobius details amino acids 227 to 244 (18 residues), see Phobius details amino acids 264 to 287 (24 residues), see Phobius details amino acids 294 to 313 (20 residues), see Phobius details amino acids 325 to 347 (23 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details amino acids 393 to 412 (20 residues), see Phobius details amino acids 468 to 493 (26 residues), see Phobius details PF07690: MFS_1" amino acids 19 to 405 (387 residues), 171.7 bits, see alignment E=2.2e-54 PF00083: Sugar_tr" amino acids 44 to 187 (144 residues), 31.3 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfl:PFL_3601)

Predicted SEED Role

"Major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See U1UTE4 at UniProt or InterPro

Protein Sequence (511 amino acids)

>PS417_12025 DSBA oxidoreductase (Pseudomonas simiae WCS417)
MSRVSPRLTLLTASGVCSLIVLDTNIVAVTLPSIARDLGANFADIEWVVSAYMLAFAALL
LPAGSIADRFGRKKTLVWGLSIFILASLGCGAAPNALFLDIARAIKGVGAALLLTSALAT
IGHTFHDDVERAKAWAFWGACMGVAMTAAPTLGGLITEYLGWRWIFYLNLPVGLALMALV
LRAIPESRDTQSARLDPWGSLAFSASLLCLMWGLIEANRIGWDNPLTYARLIGGAALLGV
FVLVERVQQRPMVDLQLFRHPRFIGALLGMFAYAGCAQVMMTLLPFYLQNGLGFSAIDSG
LGMLPFALTLLICPRIGARLAGRLTPATMMAGGLTLVGSGNLLSAWAVNVGGYLPFALAI
AVTGAGAGLLNGDTQKNIMVCVPRDRAGMASGMSTTMRFSAIMLAIGVYGALLSRHSEQL
LSASIGAQWQAQVNGIASRVVAGDMSAAMGLLPESARALVQPLARQAFVGGFSAVLWVAG
VFGLLGALVVGMLMRNPIPSAPPQLPLRALN