Protein Info for GFF2355 in Xanthobacter sp. DMC5

Annotation: Putative tartrate transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 transmembrane" amino acids 20 to 43 (24 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 111 to 135 (25 residues), see Phobius details amino acids 144 to 166 (23 residues), see Phobius details amino acids 178 to 200 (23 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details amino acids 289 to 307 (19 residues), see Phobius details amino acids 318 to 337 (20 residues), see Phobius details amino acids 343 to 363 (21 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 409 to 428 (20 residues), see Phobius details PF07690: MFS_1" amino acids 25 to 394 (370 residues), 152.6 bits, see alignment E=7e-49

Best Hits

KEGG orthology group: None (inferred from 55% identity to mpo:Mpop_5400)

Predicted SEED Role

"Nitrate/nitrite transporter" in subsystem Nitrate and nitrite ammonification

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>GFF2355 Putative tartrate transporter (Xanthobacter sp. DMC5)
VVAERQTVEARAFAKAVRRLIPLMMVLYVVSFLDRVNVGFAALTMNADLGFSPEVYGWGA
GIFFLGYFLFEVPSNLVMQKVGARLWICRIMVTWGLISAATAFVTGATGFFIARFLLGAA
EAGFLPGMILYLGYWFPLSVRARYVALFMAAVPISSALGAPLSAWILDTHGLLGLAGWQW
LFIIEGLPAVALGLVVLAMLPDGPEKARWLTAEEKAAIAARLEADHLSHDAAHQAAHPSG
THESWLPALKDTRVVVLCLVYLGLVVGLYGIGLWLPQIVRAMGYSTHDVGLILIIPYALS
ALAMLAVGQHSDRRGERVLHVAGPAIVAAVGLAASVVAPTHMAAIAAISLASMGIYAALG
PFWSVPPQFLRGTAAAAGIALINSVGNLGGFAGPYLVGFVREATGRFDVGFMALAAIVLA
AGVLVLVFRAQLGPSLQCNEAEARKI