Protein Info for GFF2353 in Sphingobium sp. HT1-2

Annotation: Phage-related transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 PF01381: HTH_3" amino acids 66 to 119 (54 residues), 35.3 bits, see alignment E=9.8e-13 PF13560: HTH_31" amino acids 66 to 117 (52 residues), 35.1 bits, see alignment E=1.4e-12

Best Hits

KEGG orthology group: None (inferred from 44% identity to mpo:Mpop_4742)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (124 amino acids)

>GFF2353 Phage-related transcriptional regulator (Sphingobium sp. HT1-2)
VTVQIVEIAGQKIAMLPVEDYQRLVDVAEDKADMVAAAEAARRRDEGEEYVPAVVVDRIM
AGDSPLRAWRKYRGLTLEQLALRVPMTAAYLSDLERVKREGSVGTWMKLARALGVAIDDI
TIES